View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_low_18 (Length: 403)
Name: NF19297_low_18
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 104 - 384
Target Start/End: Original strand, 2446410 - 2446701
Alignment:
| Q |
104 |
gtttataatgatataacggaaaagagaaaatggtgtagcgtgtgcgtggaaattggaatgattgaaagagtaaaatatgagtaatgtaagcatgtg---- |
199 |
Q |
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| T |
2446410 |
gtttataatgatataacggaaaagagaaaatggtgtagcgtgtgcgtggaaattggaatgattgaaagagtaaaatatgagtaatgtaagcatgtgattg |
2446509 |
T |
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| Q |
200 |
--attgagaagctaaatctaaatccaaagcatagcgttcattttcattcattcatttattatcaattaatcaatcaatagtatattaataattctctacc |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2446510 |
tgattgagaagctaaatctaaatccaaagcatagcgttcattttcattcattcatttattatcaattaatcaatcaatagtatattaataattctctacc |
2446609 |
T |
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| Q |
298 |
ttcactccactctcaaacttcaaagac-----aacataacacagtcaacaagtttggttccttattatcatcaaaacaatatcatgggacaa |
384 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2446610 |
ttcactccactctcaaacttcaaagacaacataacataacacagtcaacaagtttggttccttattatcatcaaaacaatatcatgggacaa |
2446701 |
T |
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