View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_low_19 (Length: 399)
Name: NF19297_low_19
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 16 - 397
Target Start/End: Complemental strand, 1755718 - 1755337
Alignment:
| Q |
16 |
attttgatagggactaagtgcagtaattcttttgaaaaacagatttcataacaatagttactactgtccaattttatttcaatgtttgccttcatctgaa |
115 |
Q |
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| T |
1755718 |
attttgatagggactaagtgcagtaattcttttgaaaaacagatttcataacaataattactactgtccaattttatttcaatgtttgccttcatctgaa |
1755619 |
T |
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| Q |
116 |
catggaacacaacatattttcctgatatggtgttaatcacccttctatgatcacaataactaattacctgtcctgcttacatgaggtctgcaaccatgat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1755618 |
catggaacacaacatattttcctgatatggtgttaatcacccttctatgatcacaataactaattacctgtcctgcttacatgaggtctgcaaccatgat |
1755519 |
T |
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| Q |
216 |
aggatttcctagttactctacttaaatggtataattacagattacaccctcgtatcggtaagtatgttaaaagatgtagaacatgagttatcactgtgta |
315 |
Q |
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| T |
1755518 |
aggatttcctagttactctacttaaatggtataattacagattacaccctcgtatcggtaagtatgttaaaagatgtagaacatgagttatcactgtgta |
1755419 |
T |
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| Q |
316 |
ttttgaatcttttcttctagtcagttagttaccttttgcattattaatggatatttgtttgaactagttgatctgtgctgct |
397 |
Q |
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| T |
1755418 |
ttttgaatcttttcttctagtcagttagttaccttttgcattattaatggatatttgtttgaactagttgatttgtgttgct |
1755337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 18985599 - 18985518
Alignment:
| Q |
31 |
aagtgcagtaattcttttgaaaaacagatttcataacaatagttactactgtccaattttatttcaatgtttgccttcatct |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||| |||| |||| |
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| T |
18985599 |
aagtgcagtaattcttttgaaaaacagatttcataacaattattactactgtctaattgtatttcaatgtttaccttgatct |
18985518 |
T |
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