View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_low_21 (Length: 382)
Name: NF19297_low_21
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 2 - 377
Target Start/End: Complemental strand, 34161375 - 34161000
Alignment:
| Q |
2 |
ctaataatagactcttttatttgaagaatattcaccttctgggaagcttcataaacaactcatttcaccgtgcccaatttcgtggagttggctgtagaat |
101 |
Q |
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| T |
34161375 |
ctaataatagactcttttatttgaagaatattcaccttctgggaagcttcataaacaactcacttcaccgtgcccaatttcgtggagttggctgtagaat |
34161276 |
T |
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| Q |
102 |
ctccacaaaataaaaacacataaggaaaacacttagaggtaagggtatttccccatactaatcatattagactaatggttaggtattattaagtagaaat |
201 |
Q |
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| T |
34161275 |
ctccacaaaataaaaacacataaggaaagcacttagaggtaagggtatttccccatactaatcatattagactaatggttaggtattataaagtagaaat |
34161176 |
T |
|
| Q |
202 |
tgtgattcataatcgtttaaagagagaagaaatttaactataaatttaattagtaaattatgagtggtgttggaatcctatagaatgctagtcttgttga |
301 |
Q |
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| T |
34161175 |
tgtgattcataatcgtttaaagagagaagaaatttaactataaatttaattagtaagttatgagtggtgttggaatcctatagaatgctagtcttgttga |
34161076 |
T |
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| Q |
302 |
ggttggggttttggattcttaggggcggtttaatctctattgtttctgcagtgttagtttaattgtctgtgctgct |
377 |
Q |
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| T |
34161075 |
ggttggggttttggattcttaggggcggtttaatctctattgtttctgcagtgttagtttaattgtctgtggtgct |
34161000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 182 - 377
Target Start/End: Original strand, 31979504 - 31979699
Alignment:
| Q |
182 |
aggtattattaagtagaaattgtgattcataatcgtttaaagagagaagaaatttaactataaatttaattagtaaattatgagtggtgttggaatccta |
281 |
Q |
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| T |
31979504 |
aggtattatagagtagaaattatgattcataatcgtttaaagagagtagaaatttaactataaatttaattagtaaattatgagtggtgttggaatccta |
31979603 |
T |
|
| Q |
282 |
tagaatgctagtcttgttgaggttggggttttggattcttaggggcggtttaatctctattgtttctgcagtgttagtttaattgtctgtgctgct |
377 |
Q |
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| T |
31979604 |
gagaatgctagtcttgttgaggttggggttttggattcttaggggcggtttaatctctattgtttctgcagtgttagtttaattgtctgtggtgct |
31979699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 138 - 232
Target Start/End: Original strand, 25673134 - 25673228
Alignment:
| Q |
138 |
aggtaagggtatttccccatactaatcatattagactaatggttaggtattattaagtagaaattgtgattcataatcgtttaaagagagaagaa |
232 |
Q |
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| T |
25673134 |
aggtaagggcacttcctcatacttatcatattagactaatggttagatattatagagtagaaagtatgattcataaccgtttaaaaagaaaagaa |
25673228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 138 - 256
Target Start/End: Original strand, 14490473 - 14490591
Alignment:
| Q |
138 |
aggtaagggtatttccccatactaatcatattagactaatggttaggtattattaagtagaaattgtgattcataatcgtttaaagagagaagaaattta |
237 |
Q |
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||||||||| | ||| ||||||| ||||||||| |||||||||||| |||| | |||||||| | |||||||||| ||||||||||| |||||||| | |
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| T |
14490473 |
aggtaagggcacttctccatacttatcatattaaactaatggttagatattgtagagtagaaagtatgattcataaccgtttaaagaggaaagaaattga |
14490572 |
T |
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| Q |
238 |
actataaatttaattagta |
256 |
Q |
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| T |
14490573 |
aatataattttatttagta |
14490591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 43656365 - 43656485
Alignment:
| Q |
138 |
aggtaagggtatttccccatactaatcatattagactaatggttaggtattattaagtagaaattgtgattcataatcgtttaaagagagaagaaattta |
237 |
Q |
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||||||||| | ||||||||||| | ||||||| ||||||||||| |||||| |||||||| | |||| ||||| |||||||||||| |||||||| | |
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| T |
43656365 |
aggtaagggcacttccccatacttaacatattaaactaatggttatatattatagagtagaaagtatgatccataaccgtttaaagagaaaagaaattca |
43656464 |
T |
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| Q |
238 |
actataaatttaattagtaaa |
258 |
Q |
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| |||| |||| |||||||| |
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| T |
43656465 |
aatatacttttatttagtaaa |
43656485 |
T |
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