View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19297_low_28 (Length: 343)

Name: NF19297_low_28
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19297_low_28
NF19297_low_28
[»] chr6 (5 HSPs)
chr6 (1-335)||(34245070-34245405)
chr6 (1-70)||(13213936-13214005)
chr6 (199-258)||(34254146-34254205)
chr6 (81-264)||(29138705-29138898)
chr6 (30-69)||(30579804-30579843)
[»] scaffold0590 (1 HSPs)
scaffold0590 (1-62)||(68-129)
[»] scaffold0275 (1 HSPs)
scaffold0275 (1-62)||(3846-3907)
[»] chr5 (1 HSPs)
chr5 (1-72)||(33566689-33566760)
[»] chr4 (5 HSPs)
chr4 (1-70)||(15041560-15041629)
chr4 (1-70)||(15112795-15112864)
chr4 (1-69)||(15039832-15039900)
chr4 (1-69)||(15114524-15114592)
chr4 (1-69)||(16003627-16003695)
[»] chr7 (3 HSPs)
chr7 (1-69)||(20186234-20186302)
chr7 (1-70)||(10866395-10866464)
chr7 (1-69)||(10868113-10868181)
[»] chr3 (2 HSPs)
chr3 (1-65)||(19844661-19844725)
chr3 (1-70)||(8584522-8584591)
[»] chr8 (2 HSPs)
chr8 (1-69)||(22692526-22692592)
chr8 (1-67)||(30187685-30187751)
[»] chr1 (1 HSPs)
chr1 (1-63)||(17309720-17309782)


Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 34245070 - 34245405
Alignment:
Q  1 tttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctgatatattgttctcgctgtgctgaggaagtttctg 100  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34245070 tttcttcctatcaatcatacttctcctataaagctaatctacatctattcgatcctattatttctgatatattgttctcgctgtgctgagga-gtttctg 34245168  T
Q  101 accttttaccctacactttgaagagggcgggtaaattccttac----ccatttcaatttcatatcagctcgtttctactgtaattgcatgctattcaatt 196  Q
    |||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  34245169 accttttaccctacactttgaagagggcgggtaaattccttacgtacccatttcaatttcatatcaactcgtttctactgtaattgcatgctattcagtt 34245268  T
Q  197 aatctaattctatgcatttgtttagataagtggttgatggtcatttaggagattttcttaaatcacacggcttgggtttttaataagtaaattgagaaac 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  34245269 aatctaattctatgcatttgtttagataagtggttgatggtcatttaggagattttcttaaatcacacggcttgggtttttaataagtaaattgagaa-- 34245366  T
Q  297 tatttgacttttgaaattttagaattctctatcgatatt 335  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34245367 tatttgacttttgaaattttagaattctctatcgatatt 34245405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 13214005 - 13213936
Alignment:
Q  1 tttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctgatat 70  Q
    |||||||||||||||||||||||| |||||||||||||||  |||| || ||||||||||||| ||||||    
T  13214005 tttcttcctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttgtgatat 13213936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 34254146 - 34254205
Alignment:
Q  199 tctaattctatgcatttgtttagataagtggttgatggtcatttaggagattttcttaaa 258  Q
    ||||||||||||||||| |||||||||| | |||||||||||| ||||||||||||||||    
T  34254146 tctaattctatgcatttttttagataagagattgatggtcattcaggagattttcttaaa 34254205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 264
Target Start/End: Original strand, 29138705 - 29138898
Alignment:
Q  81 ctgtgctgaggaagtttctgaccttttaccctacactttgaagagggcgggtaaattccttacccatttcaatttcatatcagctc----------gttt 170  Q
    |||||||  ||| ||||| || |||||||||||||||||||||||||| ||||||||  |||||| |||||||  || || | ||           ||||    
T  29138705 ctgtgctagggatgtttccgatcttttaccctacactttgaagagggcaggtaaattatttacccctttcaatggcacattaactgaatctgtcaggttt 29138804  T
Q  171 ctactgtaattgcatgctattcaattaatctaattctatgcatttgtttagataagtggttgatggtcatttaggagattttcttaaatcacac 264  Q
    || || |||||||||||||||   ||| |   |||||||| ||||||||||||||||||||||||||||||||| || ||||||  ||||||||    
T  29138805 ctgctataattgcatgctatttggttacttggattctatgtatttgtttagataagtggttgatggtcatttagtagtttttctccaatcacac 29138898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 30579843 - 30579804
Alignment:
Q  30 gaagctaatctacatctattcgatcctattatttctgata 69  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  30579843 gaagctaatctacatctattcgatcctattatttatgata 30579804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 68 - 129
Alignment:
Q  1 tttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatt 62  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  68 tttcttactatcaatcatacttctcctatgaagctaatctacatctattcgatcctattatt 129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 3907 - 3846
Alignment:
Q  1 tttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatt 62  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3907 tttcttactatcaatcatacttctcctatgaagctaatctacatctattcgatcctattatt 3846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 33566760 - 33566689
Alignment:
Q  1 tttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctgatatat 72  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||| || |||||| |||||||||||||||    
T  33566760 tttcttcttatcaatcatacttctcctatgaagctaatctacatctctttgatccttttatttctgatatat 33566689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 15041629 - 15041560
Alignment:
Q  1 tttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctgatat 70  Q
    |||||||||||||||||||||||| |||||||||||||||  |||| || ||||||||||||||||||||    
T  15041629 tttcttcctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgatat 15041560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 15112795 - 15112864
Alignment:
Q  1 tttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctgatat 70  Q
    |||||||||||||||||||||||| |||||||||||||||  |||| || ||||||||||||||||||||    
T  15112795 tttcttcctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgatat 15112864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 15039900 - 15039832
Alignment:
Q  1 tttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctgata 69  Q
    |||||||||||||||||||||||| |||||||||||||||  |||| || |||||||||||||||||||    
T  15039900 tttcttcctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgata 15039832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 15114524 - 15114592
Alignment:
Q  1 tttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctgata 69  Q
    |||||||||||||||||||||||| |||||||||||||||  |||| || |||||||||||||||||||    
T  15114524 tttcttcctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgata 15114592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 16003627 - 16003695
Alignment:
Q  1 tttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctgata 69  Q
    ||||||||||||||| |||||| | |||||||| ||||||  |||| || |||||||||||||||||||    
T  16003627 tttcttcctatcaattatacttttcctatgaagttaatctcaatctctttgatcctattatttctgata 16003695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 20186234 - 20186302
Alignment:
Q  1 tttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctgata 69  Q
    |||||||||||||||||||||||| |||||| ||||||||  |||| ||||||||||||||||||||||    
T  20186234 tttcttcctatcaatcatacttctcctatgaggctaatctcaatcttttcgatcctattatttctgata 20186302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 10866395 - 10866464
Alignment:
Q  1 tttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctgatat 70  Q
    ||||||| ||||||||||||||||  ||||||| ||||||  |||| || ||||||||||||||||||||    
T  10866395 tttcttcatatcaatcatacttcttttatgaagttaatctcaatctctttgatcctattatttctgatat 10866464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 10868113 - 10868181
Alignment:
Q  1 tttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctgata 69  Q
    ||||||||||||||||||||||||  | ||||| ||||||  |||| || |||||||||||||||||||    
T  10868113 tttcttcctatcaatcatacttctcttctgaagttaatctcaatctctttgatcctattatttctgata 10868181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 19844725 - 19844661
Alignment:
Q  1 tttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttct 65  Q
    ||||||||||||| |||||||||||||||||| |||||||  |||||||||||||||||||||||    
T  19844725 tttcttcctatcactcatacttctgctatgaaactaatctcaatctattcgatcctattatttct 19844661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 8584522 - 8584591
Alignment:
Q  1 tttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctgatat 70  Q
    |||||||||||||||||||||| |  ||||||||||||||  ||||||||||| ||||||||||||||||    
T  8584522 tttcttcctatcaatcatacttatcttatgaagctaatctcaatctattcgatactattatttctgatat 8584591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 22692526 - 22692592
Alignment:
Q  1 tttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctgata 69  Q
    |||||||||||||||||||||||| |||| ||||||||||  ||||||||||||  |||||||||||||    
T  22692526 tttcttcctatcaatcatacttctcctataaagctaatctcaatctattcgatc--attatttctgata 22692592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 30187751 - 30187685
Alignment:
Q  1 tttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctga 67  Q
    ||||||||||||||||||||||||  || |||||||||||  | ||| |||||||||||||||||||    
T  30187751 tttcttcctatcaatcatacttctcttacgaagctaatctcaacctaatcgatcctattatttctga 30187685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 17309782 - 17309720
Alignment:
Q  1 tttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattattt 63  Q
    ||||||| ||| |||||||||||| ||||||||||||||| ||| | ||||||||||||||||    
T  17309782 tttcttcttatgaatcatacttctcctatgaagctaatcttcatttcttcgatcctattattt 17309720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University