View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_low_29 (Length: 336)
Name: NF19297_low_29
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 327
Target Start/End: Complemental strand, 29149712 - 29149395
Alignment:
| Q |
17 |
aggacaagtagtgatgacagacaatcacaaaaactttgcaagttgagtgacaggttgtgaatattt--gcacaatgacattaacgagtccttcattttgt |
114 |
Q |
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| T |
29149712 |
aggacaagtagtgatgacagacaatcacaaa--ctttgcaagttgagtgacaggttgtgaatatttttgcacaatgacattaacgagtccttcattttgt |
29149615 |
T |
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| Q |
115 |
acca---acatttatcacagctgcatgttgtgcttgtccatttttggacatactaattattacattactaacatcacaagtgaggaccacatgagtaaag |
211 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
29149614 |
accactaacatttatcacagctgcatgttgtgcttgtccatttttggacatactaattattacattactaacatcacaagtgaggaccacatgagtaacg |
29149515 |
T |
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| Q |
212 |
agaaagttggatcaggttgaattcttaacagcattatatcacacg----tatcaaccacacctttcacaagacaccagtctcccttctcgcttgttctct |
307 |
Q |
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| T |
29149514 |
acagagttggatcaggttgaattcttaacagcattatatcacacgtatatatcaaccacacctttcacaagacaccagtctcccttctcgcttgttctct |
29149415 |
T |
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| Q |
308 |
tgaacccttttaattcatct |
327 |
Q |
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| T |
29149414 |
ttaacccttctaattcatct |
29149395 |
T |
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