View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19297_low_30 (Length: 332)

Name: NF19297_low_30
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19297_low_30
NF19297_low_30
[»] chr1 (2 HSPs)
chr1 (10-313)||(2945861-2946164)
chr1 (49-104)||(2940909-2940964)
[»] chr7 (1 HSPs)
chr7 (10-313)||(34348316-34348616)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 10 - 313
Target Start/End: Complemental strand, 2946164 - 2945861
Alignment:
Q  10 aagaatatattgtttttgggatgtgggggcatttgtctctagaaaactatgttattgtcttgaaggatttagttcgacttgaaattcttatagatatata 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2946164 aagaatatattgtttttgggatgtgggggcatttgtctctagaaaactatgttattgtcttgaaggatttagttcgacttgaaactcttatagatatata 2946065  T
Q  110 tagttggagttgaaaaaagaacgatctttcaaattttactgaaaattctatgaagttcatatattgttgtaccattaataaataattttttccttttcta 209  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  2946064 taattggagttgaaaaaagaacgatctttcaaattttactgaaaattctatgaagttcatatattgttgtaccattaataaataattttttcttttccta 2945965  T
Q  210 aaatgtcatagatagacttcaaagaatttccaacaaacaaaatttgaaagaccagactttattccaatttcaactgcatctattagagcatcaactccaa 309  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2945964 aaatgtcatagatagacttcaaaaaatttccaacaaacaaaatttaaaagaccagactttattccaatttcaactgcatctattagagcatcaactccaa 2945865  T
Q  310 ctaa 313  Q
    ||||    
T  2945864 ctaa 2945861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 2940909 - 2940964
Alignment:
Q  49 tagaaaactatgttattgtcttgaaggatttagttcgacttgaaattcttatagat 104  Q
    ||||||||||||||||||  ||||||||||||||| |||||||| |||||||||||    
T  2940909 tagaaaactatgttattggtttgaaggatttagttggacttgaagttcttatagat 2940964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 10 - 313
Target Start/End: Complemental strand, 34348616 - 34348316
Alignment:
Q  10 aagaatatattgtttttgggatgtgggggcatttgtctctagaaaactatgttattgtcttgaaggatttagttcgacttgaaattcttatagatatata 109  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||      
T  34348616 aagaatatattgtttttgagatgtgggggcatttgtttctagaaaactatgttattgtcttgaaggatttagttcgacttaaaactcttatagatata-- 34348519  T
Q  110 tagttggagttgaaaaaagaacgatctttcaaattttactgaaaattctatgaagttcatatattgttgta-ccattaataaataattttttccttttct 208  Q
      |||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||    
T  34348518 --gttggagttggaaaatgaacgatcttttaaattttactgaaaattctatgaagttcatgtattgttgtaaccattaataaataattttttctttttct 34348421  T
Q  209 aaaatgtcatagatagacttcaaagaatttccaacaaacaaaatttgaaagaccagactttattccaatttcaactgcatctattagagcatcaactcca 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34348420 aaaatgtcatagatagacttcaaagaatttccaacaaacaaaatttgagagaccaaactttattccaatttcaactgcatctattagagcatcaactcca 34348321  T
Q  309 actaa 313  Q
    |||||    
T  34348320 actaa 34348316  T

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