View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19297_low_31 (Length: 329)

Name: NF19297_low_31
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19297_low_31
NF19297_low_31
[»] chr6 (9 HSPs)
chr6 (13-261)||(17749757-17750005)
chr6 (61-249)||(96934-97123)
chr6 (59-249)||(27156735-27156925)
chr6 (13-61)||(27156545-27156593)
chr6 (4-67)||(97261-97324)
chr6 (13-67)||(10895095-10895149)
chr6 (262-312)||(17749620-17749670)
chr6 (15-57)||(6059905-6059947)
chr6 (109-143)||(15667412-15667446)
[»] chr7 (12 HSPs)
chr7 (15-261)||(25156576-25156815)
chr7 (94-249)||(8363400-8363556)
chr7 (102-249)||(31421631-31421779)
chr7 (254-312)||(25156835-25156893)
chr7 (4-67)||(8363739-8363802)
chr7 (4-67)||(37126635-37126698)
chr7 (13-66)||(10509279-10509332)
chr7 (61-129)||(37126430-37126497)
chr7 (13-61)||(41596726-41596774)
chr7 (15-58)||(19340993-19341036)
chr7 (109-143)||(41596500-41596534)
chr7 (201-246)||(33531809-33531854)
[»] chr1 (10 HSPs)
chr1 (59-249)||(11052748-11052939)
chr1 (143-249)||(51065346-51065453)
chr1 (59-249)||(27132713-27132896)
chr1 (65-249)||(25536857-25537040)
chr1 (15-67)||(51065093-51065145)
chr1 (256-312)||(49903377-49903436)
chr1 (4-67)||(3288204-3288267)
chr1 (13-67)||(47074528-47074582)
chr1 (15-67)||(4692647-4692699)
chr1 (59-99)||(51065280-51065320)
[»] chr4 (11 HSPs)
chr4 (61-249)||(55404706-55404895)
chr4 (102-249)||(14797621-14797769)
chr4 (4-67)||(55405033-55405096)
chr4 (13-67)||(16401063-16401117)
chr4 (13-60)||(14461648-14461695)
chr4 (13-57)||(53816249-53816293)
chr4 (75-154)||(44504580-44504659)
chr4 (4-67)||(44504757-44504820)
chr4 (109-143)||(14461421-14461455)
chr4 (96-136)||(2665096-2665136)
chr4 (13-61)||(42883689-42883737)
[»] chr3 (12 HSPs)
chr3 (61-242)||(8425542-8425724)
chr3 (96-249)||(2736262-2736416)
chr3 (96-249)||(40925308-40925462)
chr3 (96-249)||(22126781-22126935)
chr3 (4-67)||(8425341-8425404)
chr3 (4-67)||(19972046-19972109)
chr3 (13-67)||(54788867-54788921)
chr3 (13-57)||(14195349-14195393)
chr3 (109-143)||(22509909-22509943)
chr3 (15-52)||(14835315-14835352)
chr3 (102-143)||(39621799-39621840)
chr3 (13-61)||(22509669-22509717)
[»] chr5 (10 HSPs)
chr5 (96-249)||(22270621-22270775)
chr5 (15-67)||(19676980-19677032)
chr5 (13-61)||(35635106-35635154)
chr5 (13-61)||(38395167-38395215)
chr5 (13-61)||(23121066-23121114)
chr5 (109-143)||(14009350-14009384)
chr5 (109-143)||(23121306-23121340)
chr5 (109-143)||(28313163-28313197)
chr5 (13-61)||(14009576-14009624)
chr5 (3-67)||(19663153-19663217)
[»] chr2 (8 HSPs)
chr2 (61-249)||(5088359-5088547)
chr2 (59-143)||(41317895-41317979)
chr2 (3-67)||(41318120-41318184)
chr2 (13-67)||(9844854-9844908)
chr2 (109-143)||(43525106-43525140)
chr2 (257-312)||(9845130-9845190)
chr2 (13-57)||(17738119-17738163)
chr2 (13-61)||(43525332-43525380)
[»] scaffold0005 (1 HSPs)
scaffold0005 (102-249)||(41962-42110)
[»] chr8 (13 HSPs)
chr8 (96-249)||(42809291-42809445)
chr8 (102-249)||(33363354-33363502)
chr8 (59-249)||(32381880-32382071)
chr8 (59-249)||(32435835-32436026)
chr8 (72-250)||(18427338-18427505)
chr8 (114-246)||(42466449-42466581)
chr8 (13-59)||(20098980-20099026)
chr8 (13-61)||(12868395-12868443)
chr8 (15-67)||(18427646-18427698)
chr8 (109-143)||(12868635-12868669)
chr8 (13-66)||(33236605-33236658)
chr8 (114-246)||(42479011-42479144)
chr8 (4-44)||(33363715-33363755)
[»] scaffold0129 (1 HSPs)
scaffold0129 (109-149)||(7860-7900)


Alignment Details
Target: chr6 (Bit Score: 181; Significance: 9e-98; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 13 - 261
Target Start/End: Complemental strand, 17750005 - 17749757
Alignment:
Q  13 tgaaatcatcaataattgactcagaactaatatatgcattaatttccctatcaatcaataagtattttttggtttgtccattggcagctaaacattagca 112  Q
    ||||||||| |||||||||||| ||||||||| |||||||||||| | |||||||||| ||||||||| ||||||||||||||||||  |||||||||||    
T  17750005 tgaaatcattaataattgactcggaactaatacatgcattaattttcttatcaatcaagaagtattttatggtttgtccattggcagtcaaacattagca 17749906  T
Q  113 taattcttgaatagttgataaatttttcaaagttgataattggcgagcatgaaaaaagaaatatcgaagatgaaatagcaaattaaacttctcttgatca 212  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||  ||||||||||||    
T  17749905 taattcttgaatagtagataaattcttcaaagttgataattggcgaacattaaaaaagaaatatcgaagatgaaatagcaaattaatattctcttgatca 17749806  T
Q  213 ctgaaatccatggataatatttttcaacaagagtacaattctaccaaat 261  Q
    || ||||||||||||||||||||||||||||||||||||||| ||||||    
T  17749805 ctaaaatccatggataatatttttcaacaagagtacaattctgccaaat 17749757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 61 - 249
Target Start/End: Complemental strand, 97123 - 96934
Alignment:
Q  61 tatcaatcaataagtattttttggtttgtccattggcagctaaacattagcataattcttgaatagttgataaatttttcaaagttgataattggcgagc 160  Q
    |||||||||| ||||||| |||| |||||||| ||||||| |||||| |||| ||||||||||||||||||||||| || ||||||||| |||||||| |    
T  97123 tatcaatcaagaagtattctttgttttgtccagtggcagccaaacatgagcacaattcttgaatagttgataaattcttgaaagttgatgattggcgaac 97024  T
Q  161 atgaaaaaagaaatatcgaagatgaaatagcaaattaaacttctcttgatcactgaaatccat-ggataatatttttcaacaagagtaca 249  Q
    || ||||| ||||| |||||||| |||| |||| || | |||||| |||||||| |||||||| ||||||||||||| ||||||||||||    
T  97023 atcaaaaaggaaatgtcgaagatcaaatggcaatttcatcttctcatgatcactaaaatccatgggataatatttttgaacaagagtaca 96934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 59 - 249
Target Start/End: Original strand, 27156735 - 27156925
Alignment:
Q  59 cctatcaatcaataagtattttttggtttgtccattggcagctaaacattagcataattcttgaatagttgataaatttttcaaagttgataattggcga 158  Q
    |||||||||||| ||||||||||||||||||||||||| ||| ||||||  ||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  27156735 cctatcaatcaagaagtattttttggtttgtccattggtagccaaacatgggcataattcttgaatagttgataaattcttcaaagttgatgattggcga 27156834  T
Q  159 gcatgaaaaaagaaatatcgaagatgaaatagcaaattaaacttctcttgatcactgaaatccatg-gataatatttttcaacaagagtaca 249  Q
    |||| |||||  |||| | |||||| ||||   ||||||  | | |||||| |||| |||| |||| |||||||||||||||||| ||||||    
T  27156835 gcatcaaaaagaaaatgttgaagataaaatgaaaaattagtcgtatcttga-cactaaaattcatgtgataatatttttcaacaatagtaca 27156925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 27156545 - 27156593
Alignment:
Q  13 tgaaatcatcaataattgactcagaactaatatatgcattaatttccct 61  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27156545 tgaaatcatcaataattgactcagaactaatacatgcattaatttccct 27156593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 97324 - 97261
Alignment:
Q  4 cgagtgagatgaaatcatcaataattgactcagaactaatatatgcattaatttccctatcaat 67  Q
    |||||||  |||||||||||||||||||||| ||||||||| ||||| |||||||||| |||||    
T  97324 cgagtgacttgaaatcatcaataattgactcggaactaatagatgcactaatttccctttcaat 97261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 10895095 - 10895149
Alignment:
Q  13 tgaaatcatcaataattgactcagaactaatatatgcattaatttccctatcaat 67  Q
    |||||||||||||||||||||| ||| ||||| ||||| |||||||||| |||||    
T  10895095 tgaaatcatcaataattgactcggaattaatagatgcactaatttccctttcaat 10895149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 17749670 - 17749620
Alignment:
Q  262 aaataaccaatctggcaaaaacaattaacattacttaatactcatcacact 312  Q
    ||||||||||| || | ||||||||||| ||||||||||||||||||||||    
T  17749670 aaataaccaatttgaccaaaacaattaagattacttaatactcatcacact 17749620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 6059905 - 6059947
Alignment:
Q  15 aaatcatcaataattgactcagaactaatatatgcattaattt 57  Q
    ||||||||||||||||||||  |||||||| ||||||||||||    
T  6059905 aaatcatcaataattgactcgaaactaatacatgcattaattt 6059947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 15667412 - 15667446
Alignment:
Q  109 agcataattcttgaatagttgataaatttttcaaa 143  Q
    |||||||||||||||||||||||||||| ||||||    
T  15667412 agcataattcttgaatagttgataaattcttcaaa 15667446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 15 - 261
Target Start/End: Original strand, 25156576 - 25156815
Alignment:
Q  15 aaatcatcaataattgactcagaactaatatatgcattaatttccctatcaatcaataagtattttttggtttgtccattggcagctaaacattagcata 114  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||     |||||||||||||    
T  25156576 aaatcatcaataattgactcagaactaacacatgcattaatttccctatcaatcaagaagtattttttggtttgtccattgg-----aaacattagcata 25156670  T
Q  115 attcttgaatagttgataaatttttcaaagttgataattggcgagcatgaaaaaagaaatatcgaagatgaaatagcaaattaaacttctcttgatcact 214  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||    
T  25156671 attcttgaatagttgataaatttt-caaagttgataattggcgagcatgaaaaaa-aaatatcgaagatgaaatagcaaattaatcttcccttgatcact 25156768  T
Q  215 gaaatccatggataatatttttcaacaagagtacaattctaccaaat 261  Q
     ||||||||  ||||||||||||||||||||||||||||||||||||    
T  25156769 aaaatccataaataatatttttcaacaagagtacaattctaccaaat 25156815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 94 - 249
Target Start/End: Complemental strand, 8363556 - 8363400
Alignment:
Q  94 tggcagctaaacattagcataattcttgaatagttgataaatttttcaaagttgataattggcgagcatgaaaaaagaaatatcgaagatgaaatagcaa 193  Q
    ||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||| | ||||| ||||| ||||||||||||| ||||    
T  8363556 tggcagccaaacatgagcataattcttggatagttgataaatttttcaaagttgatgattggcgagcctcaaaaaggaaatgtcgaagatgaaatggcaa 8363457  T
Q  194 attaaacttctcttgatcactgaaatccat-ggataatatttttcaacaagagtaca 249  Q
    |||||  ||||||| |||||| |||||||| ||||||||||||||||||||||||||    
T  8363456 attaattttctctttatcactaaaatccatgggataatatttttcaacaagagtaca 8363400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 102 - 249
Target Start/End: Complemental strand, 31421779 - 31421631
Alignment:
Q  102 aaacattagcataattcttgaatagttgataaatttttcaaagttgataattggcgagcatgaaaaaagaaatatcgaagatgaaatagcaaattaaact 201  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||  ||||| | ||||| |||||   ||||||||||| ||||||||| ||    
T  31421779 aaacatgagcataattcttgaatagttgataaatttttcaaagttgatgattcacgagcctcaaaaaggaaatggtgaagatgaaatggcaaattaatct 31421680  T
Q  202 tctcttgatcactgaaatccat-ggataatatttttcaacaagagtaca 249  Q
    |||| |||||||| |||| ||| ||||||||||||||||||||||||||    
T  31421679 tctcctgatcactaaaattcatgggataatatttttcaacaagagtaca 31421631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 254 - 312
Target Start/End: Original strand, 25156835 - 25156893
Alignment:
Q  254 taccaaataaataaccaatctggcaaaaacaattaacattacttaatactcatcacact 312  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25156835 tacctaataaataaccaatatggcaaaaacaattaacattacttaatactcatcacact 25156893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 8363802 - 8363739
Alignment:
Q  4 cgagtgagatgaaatcatcaataattgactcagaactaatatatgcattaatttccctatcaat 67  Q
    |||||||  ||||||||||||||||||| |||||||||||| ||||  |||||||||| |||||    
T  8363802 cgagtgacttgaaatcatcaataattgattcagaactaatacatgcgctaatttccctttcaat 8363739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 37126698 - 37126635
Alignment:
Q  4 cgagtgagatgaaatcatcaataattgactcagaactaatatatgcattaatttccctatcaat 67  Q
    |||||||  ||||||||||||||||| |||| ||||||||| ||||| |||||||||| |||||    
T  37126698 cgagtgacttgaaatcatcaataattaactcggaactaatagatgcactaatttccctttcaat 37126635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 10509279 - 10509332
Alignment:
Q  13 tgaaatcatcaataattgactcagaactaatatatgcattaatttccctatcaa 66  Q
    |||||||||||||||| ||||| ||||||||| ||||| |||||||||| ||||    
T  10509279 tgaaatcatcaataatagactcggaactaatacatgcactaatttccctttcaa 10509332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 37126497 - 37126430
Alignment:
Q  61 tatcaatcaataagtattttttggtttgtccattggcagctaaacattagcataattcttgaatagttg 129  Q
    |||||||||| ||||||| |||| ||||||| | |||||| |||||| |||| ||||||||||||||||    
T  37126497 tatcaatcaagaagtattctttgttttgtccgt-ggcagccaaacatgagcacaattcttgaatagttg 37126430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 41596774 - 41596726
Alignment:
Q  13 tgaaatcatcaataattgactcagaactaatatatgcattaatttccct 61  Q
    ||||||||||||||| ||||||||||||||||  |||| ||||||||||    
T  41596774 tgaaatcatcaataactgactcagaactaatacttgcactaatttccct 41596726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 19341036 - 19340993
Alignment:
Q  15 aaatcatcaataattgactcagaactaatatatgcattaatttc 58  Q
    |||||||||||| ||||||||||||||||| ||||| |||||||    
T  19341036 aaatcatcaatagttgactcagaactaatacatgcactaatttc 19340993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 41596534 - 41596500
Alignment:
Q  109 agcataattcttgaatagttgataaatttttcaaa 143  Q
    |||||||||||||||||||||||||||| ||||||    
T  41596534 agcataattcttgaatagttgataaattcttcaaa 41596500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 33531854 - 33531809
Alignment:
Q  201 ttctcttgatcactgaaatccatggataatatttttcaacaagagt 246  Q
    |||||||||| | |||||| |||||||| |||||||||||||||||    
T  33531854 ttctcttgataattgaaattcatggatagtatttttcaacaagagt 33531809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 59 - 249
Target Start/End: Original strand, 11052748 - 11052939
Alignment:
Q  59 cctatcaatcaataagtattttttggtttgtccattggcagctaaacattagcataattcttgaatagttgataaatttttcaaagttgataattggcga 158  Q
    |||||||| ||| ||||||||||||| |||||||||| || | |||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  11052748 cctatcaagcaacaagtattttttgggttgtccattgacaaccaaacatgagcataattcttgaatagttgataaattattcaaagttgatgattggcga 11052847  T
Q  159 gcatgaaaaaagaaatatcgaagatgaaatagcaaattaaacttctcttgatcactgaaatccat-ggataatatttttcaacaagagtaca 249  Q
    |||| ||||| | ||| ||||||||||||| | ||| ||| ||||||||||||||| |||||||| |||||||||||| |||||||||||||    
T  11052848 gcatcaaaaagggaatgtcgaagatgaaatggtaaagtaatcttctcttgatcactaaaatccatgggataatattttgcaacaagagtaca 11052939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 143 - 249
Target Start/End: Original strand, 51065346 - 51065453
Alignment:
Q  143 agttgataattggcgagcatgaaaaaagaaatatcgaagatgaaatagcaaattaaacttctcttgatcactgaaatccatgg-ataatatttttcaaca 241  Q
    ||||||| |||||||||||| ||||| ||||||| ||||||||||| | ||||||| ||||||||||||||| |||| ||||| ||||||||||||||||    
T  51065346 agttgatgattggcgagcatcaaaaaggaaatattgaagatgaaatggtaaattaatcttctcttgatcactaaaattcatggaataatatttttcaaca 51065445  T
Q  242 agagtaca 249  Q
    ||||||||    
T  51065446 agagtaca 51065453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 59 - 249
Target Start/End: Complemental strand, 27132896 - 27132713
Alignment:
Q  59 cctatcaatcaataagtattttttggtttgtccattg---------gcagctaaacattagcataattcttgaatagttgataaatttttcaaagttgat 149  Q
    |||||||| |||| |||||||||||| ||||||||||         ||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  27132896 cctatcaagcaatgagtattttttgggttgtccattggcaggagtggcagccaaacatgagcataattcttgaatagttgataaatttttcaaagttgat 27132797  T
Q  150 aattggcgagcatgaaaaaagaaatatcgaagatgaaatagcaaattaaacttctcttgatcactgaaatccat-ggataatatttttcaacaagagtac 248  Q
     ||                 ||||| | ||||||||||| ||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  27132796 gat-----------------gaaatgtagaagatgaaatggcaaattaatcttctcttgatcactgaaatccatgggaaaatatttttcaacaagagtac 27132714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 249
Target Start/End: Complemental strand, 25537040 - 25536857
Alignment:
Q  65 aatcaataagtattttttggtttgtccattggcagctaaacattagcataattcttgaatagttgataaatttttcaaagttgataattggcgagcatga 164  Q
    |||||| ||||| ||||||||||||||||||||||| |||||| | |||||||||  |||| |||||||| | |||||||||||| ||| | || ||| |    
T  25537040 aatcaagaagtaatttttggtttgtccattggcagccaaacataaacataattctataatatttgataaa-tcttcaaagttgatgattagagaacataa 25536942  T
Q  165 aaaaagaaatatcgaagatgaaatagcaaattaaacttctcttgatcactgaaatccatg-gataatatttttcaacaagagtaca 249  Q
    |||| ||||  | || | |||||| ||||||||  ||||||||||||||| |||| |||| |||||| ||||||||||| ||||||    
T  25536941 aaaaggaaacgttgaggttgaaattgcaaattactcttctcttgatcactaaaattcatgagataat-tttttcaacaaaagtaca 25536857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 51065093 - 51065145
Alignment:
Q  15 aaatcatcaataattgactcagaactaatatatgcattaatttccctatcaat 67  Q
    |||||||||||||||||||| ||||||||| ||||| |||||||||| |||||    
T  51065093 aaatcatcaataattgactcggaactaatacatgcactaatttccctttcaat 51065145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 49903377 - 49903436
Alignment:
Q  256 ccaaataaataaccaatctggcaaaaacaattaacat---tacttaatactcatcacact 312  Q
    |||||||||||| |||| |||||||||||||||||||   || |||||||||||||||||    
T  49903377 ccaaataaataatcaatttggcaaaaacaattaacatctataattaatactcatcacact 49903436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 3288204 - 3288267
Alignment:
Q  4 cgagtgagatgaaatcatcaataattgactcagaactaatatatgcattaatttccctatcaat 67  Q
    |||||||  |||||||||| ||||||||||| ||||||||| ||||| ||||||| || |||||    
T  3288204 cgagtgacttgaaatcatccataattgactcggaactaatacatgcactaatttcgctttcaat 3288267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 47074528 - 47074582
Alignment:
Q  13 tgaaatcatcaataattgactcagaactaatatatgcattaatttccctatcaat 67  Q
    |||||||||||||||||||||| ||||||||| || || |||||| ||| |||||    
T  47074528 tgaaatcatcaataattgactcggaactaatacattcactaattttcctttcaat 47074582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 4692699 - 4692647
Alignment:
Q  15 aaatcatcaataattgactcagaactaatatatgcattaatttccctatcaat 67  Q
    ||||||||||||||||| || ||||||||| || ||||||||| ||| |||||    
T  4692699 aaatcatcaataattgattcggaactaatacattcattaattttcctttcaat 4692647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 51065280 - 51065320
Alignment:
Q  59 cctatcaatcaataagtattttttggtttgtccattggcag 99  Q
    |||||||||||| |||| |||||||||||||| ||||||||    
T  51065280 cctatcaatcaagaagtgttttttggtttgtcaattggcag 51065320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 61 - 249
Target Start/End: Complemental strand, 55404895 - 55404706
Alignment:
Q  61 tatcaatcaataagtattttttggtttgtccattggcagctaaacattagcataattcttgaatagttgataaatttttcaaagttgataattggcgagc 160  Q
    |||||||||| ||||||| |||| |||||||| ||||||| |||||| |||| ||||||||||||||||||||||| || ||||||||| |||||||| |    
T  55404895 tatcaatcaagaagtattctttgttttgtccagtggcagccaaacatgagcacaattcttgaatagttgataaattcttgaaagttgatgattggcgaac 55404796  T
Q  161 atgaaaaaagaaatatcgaagatgaaatagcaaattaaacttctcttgatcactgaaatccat-ggataatatttttcaacaagagtaca 249  Q
    || ||||| ||||| |||||||| |||| |||| |||| |||||| |||||||| |||||||| ||||||||||||| ||||||||||||    
T  55404795 atcaaaaaggaaatctcgaagatcaaatggcaatttaatcttctcatgatcactaaaatccatgggataatatttttgaacaagagtaca 55404706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 102 - 249
Target Start/End: Original strand, 14797621 - 14797769
Alignment:
Q  102 aaacattagcataattcttgaatagttgataaatttttcaaagttgataattggcgagcatgaaaaaagaaatatcgaagatgaaatagcaaattaaact 201  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||  ||||| | ||||| ||||| | ||||||||||| |||||||||  |    
T  14797621 aaacatgagcataattcttgaatagttgataaatttttcaaagttgatgattcacgagcctcaaaaaggaaatgttgaagatgaaatggcaaattaatgt 14797720  T
Q  202 tctcttgatcactgaaatccat-ggataatatttttcaacaagagtaca 249  Q
    | || || ||||| |||||||| ||||||||||||||||||||||||||    
T  14797721 tttcctggtcactaaaatccatgggataatatttttcaacaagagtaca 14797769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 55405096 - 55405033
Alignment:
Q  4 cgagtgagatgaaatcatcaataattgactcagaactaatatatgcattaatttccctatcaat 67  Q
    |||||||  |||||||||||||||||||||| ||||||||| ||||| |||||||||| |||||    
T  55405096 cgagtgacttgaaatcatcaataattgactcggaactaatagatgcactaatttccctttcaat 55405033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 16401117 - 16401063
Alignment:
Q  13 tgaaatcatcaataattgactcagaactaatatatgcattaatttccctatcaat 67  Q
    |||||||||||||||||||||| ||||||||| ||||| |||||||||| |||||    
T  16401117 tgaaatcatcaataattgactcggaactaatacatgcactaatttccctttcaat 16401063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 14461695 - 14461648
Alignment:
Q  13 tgaaatcatcaataattgactcagaactaatatatgcattaatttccc 60  Q
    ||||||||||||||| ||||||||||||||||  ||||||||||||||    
T  14461695 tgaaatcatcaataactgactcagaactaatacttgcattaatttccc 14461648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 53816249 - 53816293
Alignment:
Q  13 tgaaatcatcaataattgactcagaactaatatatgcattaattt 57  Q
    |||||||||||||||||||||| ||||||||| ||||| ||||||    
T  53816249 tgaaatcatcaataattgactcggaactaatacatgcactaattt 53816293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 154
Target Start/End: Complemental strand, 44504659 - 44504580
Alignment:
Q  75 tattttttggtttgtccattggcagctaaacattagcataattcttgaatagttgataaatttttcaaagttgataattg 154  Q
    |||||||| | |||||||||||||   |||||  ||||||||| || ||||||| |||||||||| ||||||||| ||||    
T  44504659 tattttttaggttgtccattggcaatcaaacaagagcataattttttaatagttaataaattttttaaagttgatgattg 44504580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 44504820 - 44504757
Alignment:
Q  4 cgagtgagatgaaatcatcaataattgactcagaactaatatatgcattaatttccctatcaat 67  Q
    |||||||  ||||||||||||||||||| || ||||||||| |||| ||||||| ||| |||||    
T  44504820 cgagtgatctgaaatcatcaataattgattcggaactaatacatgctttaattttcctttcaat 44504757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 14461455 - 14461421
Alignment:
Q  109 agcataattcttgaatagttgataaatttttcaaa 143  Q
    |||||||||||||||||||||||||||| ||||||    
T  14461455 agcataattcttgaatagttgataaattcttcaaa 14461421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 2665096 - 2665136
Alignment:
Q  96 gcagctaaacattagcataattcttgaatagttgataaatt 136  Q
    ||||| |||||  ||||||||||||||||||||||||||||    
T  2665096 gcagccaaacacgagcataattcttgaatagttgataaatt 2665136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 42883689 - 42883737
Alignment:
Q  13 tgaaatcatcaataattgactcagaactaatatatgcattaatttccct 61  Q
    |||||| |||||||| | ||||||||||||||| |||| ||||||||||    
T  42883689 tgaaattatcaataactaactcagaactaatatttgcactaatttccct 42883737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 61 - 242
Target Start/End: Original strand, 8425542 - 8425724
Alignment:
Q  61 tatcaatcaataagtattttttggtttgtccattggcagctaaacattagcataattcttgaatagttgataaatttttcaaagttgataattggcgagc 160  Q
    |||||||||| ||||||| |||| |||||||| ||||||| |||||| |||| ||||||||||||||||||||||| || ||||||||| |||||||| |    
T  8425542 tatcaatcaagaagtattctttgttttgtccagtggcagccaaacatgagcacaattcttgaatagttgataaattcttgaaagttgatgattggcgaac 8425641  T
Q  161 atgaaaaaagaaatatcgaagatgaaatagcaaattaaacttctcttgatcactgaaatccat-ggataatatttttcaacaa 242  Q
    || ||||| ||||| |||||||| |||| |||| |||| |||| | |||||||| |||||||| ||||||||||||| |||||    
T  8425642 atcaaaaaggaaatgtcgaagatcaaatggcaatttaatcttcgcatgatcactaaaatccatgggataatatttttgaacaa 8425724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 96 - 249
Target Start/End: Complemental strand, 2736416 - 2736262
Alignment:
Q  96 gcagctaaacattagcataattcttgaatagttgataaatttttcaaagttgataattggcgagcatgaaaaaagaaatatcgaagatgaaatagcaaat 195  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||  ||||| | ||||| ||||| |  |||||||||| ||||||    
T  2736416 gcagccaaacatgagcataattcttgaatagttgataaatttttcaaagttgatgattcacgagcctcaaaaaggaaatgtttaagatgaaatggcaaat 2736317  T
Q  196 taaacttctcttgatcactgaaatccat-ggataatatttttcaacaagagtaca 249  Q
    ||| |||||| || ||||| |||||||| ||||||||||||||||||||||||||    
T  2736316 taatcttctcctggtcactaaaatccatgggataatatttttcaacaagagtaca 2736262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 96 - 249
Target Start/End: Complemental strand, 40925462 - 40925308
Alignment:
Q  96 gcagctaaacattagcataattcttgaatagttgataaatttttcaaagttgataattggcgagcatgaaaaaagaaatatcgaagatgaaatagcaaat 195  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||  ||||| | ||||| ||||| |  |||||||||| ||||||    
T  40925462 gcagccaaacatgagcataattcttgaatagttgataaatttttcaaagttgatgattcacgagcctcaaaaaggaaatgtttaagatgaaatggcaaat 40925363  T
Q  196 taaacttctcttgatcactgaaatccat-ggataatatttttcaacaagagtaca 249  Q
    ||| |||||| || ||||| |||||||| ||||||||||||||||||||||||||    
T  40925362 taatcttctcctggtcactaaaatccatgggataatatttttcaacaagagtaca 40925308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 96 - 249
Target Start/End: Original strand, 22126781 - 22126935
Alignment:
Q  96 gcagctaaacattagcataattcttgaatagttgataaatttttcaaagttgataattggcgagcatgaaaaaagaaatatcgaagatgaaatagcaaat 195  Q
    ||||| |||||| | ||||||||||||||||||||||||||||||||||||||| |||  ||||| | ||||| ||||| |   ||||||||| ||||||    
T  22126781 gcagccaaacatgaacataattcttgaatagttgataaatttttcaaagttgatgattcacgagcctcaaaaaggaaatgttttagatgaaatggcaaat 22126880  T
Q  196 taaacttctcttgatcactgaaatccat-ggataatatttttcaacaagagtaca 249  Q
    ||| |||||| |||||||| |||||||| ||||||||||||||||||||||||||    
T  22126881 taatcttctcctgatcactaaaatccatgggataatatttttcaacaagagtaca 22126935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 8425341 - 8425404
Alignment:
Q  4 cgagtgagatgaaatcatcaataattgactcagaactaatatatgcattaatttccctatcaat 67  Q
    |||||||  |||||||||||||||||||||| ||||||||| ||||| |||||||||| |||||    
T  8425341 cgagtgacttgaaatcatcaataattgactcggaactaatagatgcactaatttccctttcaat 8425404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 19972046 - 19972109
Alignment:
Q  4 cgagtgagatgaaatcatcaataattgactcagaactaatatatgcattaatttccctatcaat 67  Q
    |||||||  |||||||||||||||||||||| ||| ||||| ||||| |||||||||| |||||    
T  19972046 cgagtgacttgaaatcatcaataattgactcggaattaatagatgcactaatttccctttcaat 19972109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 54788921 - 54788867
Alignment:
Q  13 tgaaatcatcaataattgactcagaactaatatatgcattaatttccctatcaat 67  Q
    |||||||||||||||||||||| ||||||||| ||||| ||||||| || |||||    
T  54788921 tgaaatcatcaataattgactcggaactaatacatgcactaatttcactttcaat 54788867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 14195349 - 14195393
Alignment:
Q  13 tgaaatcatcaataattgactcagaactaatatatgcattaattt 57  Q
    |||||||||||||||||||||| ||||||||| ||||| ||||||    
T  14195349 tgaaatcatcaataattgactcggaactaatacatgcactaattt 14195393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 22509909 - 22509943
Alignment:
Q  109 agcataattcttgaatagttgataaatttttcaaa 143  Q
    |||||||||||||||||||||||||||| ||||||    
T  22509909 agcataattcttgaatagttgataaattcttcaaa 22509943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 14835352 - 14835315
Alignment:
Q  15 aaatcatcaataattgactcagaactaatatatgcatt 52  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  14835352 aaatcatcaataattgactcggaactaataaatgcatt 14835315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 39621840 - 39621799
Alignment:
Q  102 aaacattagcataattcttgaatagttgataaatttttcaaa 143  Q
    |||||| |||||||||||| ||||||||||||||| ||||||    
T  39621840 aaacatgagcataattcttaaatagttgataaattcttcaaa 39621799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 22509669 - 22509717
Alignment:
Q  13 tgaaatcatcaataattgactcagaactaatatatgcattaatttccct 61  Q
    ||||||||||||||| ||||||||||||||||  |||| |||| |||||    
T  22509669 tgaaatcatcaataactgactcagaactaatacttgcactaatatccct 22509717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 7e-37; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 96 - 249
Target Start/End: Original strand, 22270621 - 22270775
Alignment:
Q  96 gcagctaaacattagcataattcttgaatagttgataaatttttcaaagttgataattggcgagcatgaaaaaagaaatatcgaagatgaaatagcaaat 195  Q
    ||||| |||| | ||||||||||||||||||||||||||||||||||||||||| |||  ||||| | ||||| ||||| |  |||||||||| ||||||    
T  22270621 gcagccaaacttgagcataattcttgaatagttgataaatttttcaaagttgatgattcacgagcctcaaaaaggaaatgtttaagatgaaatggcaaat 22270720  T
Q  196 taaacttctcttgatcactgaaatccat-ggataatatttttcaacaagagtaca 249  Q
    ||| |||||| || ||||| |||||||| ||||||||||||||||||||||||||    
T  22270721 taatcttctcctggtcactaaaatccatgggataatatttttcaacaagagtaca 22270775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 19676980 - 19677032
Alignment:
Q  15 aaatcatcaataattgactcagaactaatatatgcattaatttccctatcaat 67  Q
    |||||||||||||||||||| ||||||||| ||||| |||||||||| |||||    
T  19676980 aaatcatcaataattgactcggaactaatacatgcactaatttccctttcaat 19677032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 35635106 - 35635154
Alignment:
Q  13 tgaaatcatcaataattgactcagaactaatatatgcattaatttccct 61  Q
    |||||||||| ||||||||||||||||||||| ||||| ||||||||||    
T  35635106 tgaaatcatcgataattgactcagaactaatacatgcactaatttccct 35635154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 38395167 - 38395215
Alignment:
Q  13 tgaaatcatcaataattgactcagaactaatatatgcattaatttccct 61  Q
    |||||||||| ||||||||||||||||||||| ||||| ||||||||||    
T  38395167 tgaaatcatcgataattgactcagaactaatacatgcactaatttccct 38395215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 23121066 - 23121114
Alignment:
Q  13 tgaaatcatcaataattgactcagaactaatatatgcattaatttccct 61  Q
    ||||||||||||||| ||||||||||||||||  |||| ||||||||||    
T  23121066 tgaaatcatcaataactgactcagaactaatacttgcactaatttccct 23121114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 14009384 - 14009350
Alignment:
Q  109 agcataattcttgaatagttgataaatttttcaaa 143  Q
    |||||||||||||||||||||||||||| ||||||    
T  14009384 agcataattcttgaatagttgataaattcttcaaa 14009350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 23121306 - 23121340
Alignment:
Q  109 agcataattcttgaatagttgataaatttttcaaa 143  Q
    |||||||||||||||||||||||||||| ||||||    
T  23121306 agcataattcttgaatagttgataaattcttcaaa 23121340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 28313197 - 28313163
Alignment:
Q  109 agcataattcttgaatagttgataaatttttcaaa 143  Q
    |||||||||||||||||||||||||||| ||||||    
T  28313197 agcataattcttgaatagttgataaattcttcaaa 28313163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 14009624 - 14009576
Alignment:
Q  13 tgaaatcatcaataattgactcagaactaatatatgcattaatttccct 61  Q
    ||||||||||||||| ||||||| ||||||||  |||| ||||||||||    
T  14009624 tgaaatcatcaataactgactcataactaatacttgcactaatttccct 14009576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 19663153 - 19663217
Alignment:
Q  3 tcgagtgagatgaaatcatcaataattgactcagaactaatatatgcattaatttccctatcaat 67  Q
    ||||||||  |||||||||||||||||||||   |||||||| ||||| ||||||| || |||||    
T  19663153 tcgagtgatttgaaatcatcaataattgacttgaaactaatacatgcactaatttcactttcaat 19663217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 61 - 249
Target Start/End: Complemental strand, 5088547 - 5088359
Alignment:
Q  61 tatcaatcaataagtattttttggtttgtccattggcagctaaacattagcataattcttgaatagttgataaatttttcaaagttgataattggcgagc 160  Q
    |||||||||| ||||||| |||| ||||||||| |||||| |||||| |||| ||| ||||||||||| ||||||| || ||||||||| ||| |||| |    
T  5088547 tatcaatcaagaagtattctttgttttgtccat-ggcagccaaacatgagcacaatgcttgaatagtttataaattcttgaaagttgatgattagcgaac 5088449  T
Q  161 atgaaaaaagaaatatcgaagatgaaatagcaaattaaacttctcttgatcactgaaatccat-ggataatatttttcaacaagagtaca 249  Q
     | ||||| ||||| |||||||| |||| |||| |||| |||||| |||||||| |||||||| ||||||||||||| ||||||||||||    
T  5088448 gtcaaaaaggaaatgtcgaagatcaaatggcaatttaatcttctcatgatcactaaaatccatgggataatatttttgaacaagagtaca 5088359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 41317979 - 41317895
Alignment:
Q  59 cctatcaatcaataagtattttttggtttgtccattggcagctaaacattagcataattcttgaatagttgataaatttttcaaa 143  Q
    |||||||||||| ||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  41317979 cctatcaatcaagaagtattttttggtttgtctattggtagctaaacatgagcataattcttgaatagttgataaatttttcaaa 41317895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 41318184 - 41318120
Alignment:
Q  3 tcgagtgagatgaaatcatcaataattgactcagaactaatatatgcattaatttccctatcaat 67  Q
    ||||||||  |||||||||||||||||||||| ||| |||||| |||| |||||||||| |||||    
T  41318184 tcgagtgacttgaaatcatcaataattgactcggaagtaatatgtgcactaatttccctttcaat 41318120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 9844854 - 9844908
Alignment:
Q  13 tgaaatcatcaataattgactcagaactaatatatgcattaatttccctatcaat 67  Q
    ||||||||||||||||||||||  |||||||| ||||| |||||| ||| |||||    
T  9844854 tgaaatcatcaataattgactcgaaactaatacatgcagtaattttcctttcaat 9844908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 43525140 - 43525106
Alignment:
Q  109 agcataattcttgaatagttgataaatttttcaaa 143  Q
    |||||||||||||||||||||||||||| ||||||    
T  43525140 agcataattcttgaatagttgataaattcttcaaa 43525106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 312
Target Start/End: Original strand, 9845130 - 9845190
Alignment:
Q  257 caaataaataaccaatctggcaaaaacaattaacattac-----ttaatactcatcacact 312  Q
    |||| ||||||||||| |||||||| |||||||||||||     |||||||||||||||||    
T  9845130 caaacaaataaccaatttggcaaaatcaattaacattactataattaatactcatcacact 9845190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 17738119 - 17738163
Alignment:
Q  13 tgaaatcatcaataattgactcagaactaatatatgcattaattt 57  Q
    |||||||||||| ||||||||| ||||||||| ||||| ||||||    
T  17738119 tgaaatcatcaacaattgactcggaactaatacatgcactaattt 17738163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 43525380 - 43525332
Alignment:
Q  13 tgaaatcatcaataattgactcagaactaatatatgcattaatttccct 61  Q
    ||||||||||||||| ||||||||||||||||  |||| || |||||||    
T  43525380 tgaaatcatcaataactgactcagaactaatacttgcactagtttccct 43525332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 102 - 249
Target Start/End: Complemental strand, 42110 - 41962
Alignment:
Q  102 aaacattagcataattcttgaatagttgataaatttttcaaagttgataattggcgagcatgaaaaaagaaatatcgaagatgaaatagcaaattaaact 201  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||  ||||| | ||||| ||||| | ||||||||||| |||||||||  |    
T  42110 aaacatgagcataattcttgaatagttgataaatttttcaaagttgatgattcacgagcctcaaaaaggaaatgttgaagatgaaatggcaaattaatat 42011  T
Q  202 tctcttgatcactgaaatccat-ggataatatttttcaacaagagtaca 249  Q
    | || || ||||| |||||||| ||||||||||||||||||||||||||    
T  42010 tatcctggtcactaaaatccatgggataatatttttcaacaagagtaca 41962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 96 - 249
Target Start/End: Complemental strand, 42809445 - 42809291
Alignment:
Q  96 gcagctaaacattagcataattcttgaatagttgataaatttttcaaagttgataattggcgagcatgaaaaaagaaatatcgaagatgaaatagcaaat 195  Q
    ||||| |||||| ||| ||||||||||||||||||||||||||||||||||||| |||  ||||| | ||||| ||||| |   |||||||||  |||||    
T  42809445 gcagccaaacatgagcctaattcttgaatagttgataaatttttcaaagttgatgattcacgagcctcaaaaaggaaatgtgttagatgaaatgacaaat 42809346  T
Q  196 taaacttctcttgatcactgaaatccat-ggataatatttttcaacaagagtaca 249  Q
    ||| |||||| |||||||| |||||||| ||||||||||||||||||||||||||    
T  42809345 taatcttctcctgatcactaaaatccatgggataatatttttcaacaagagtaca 42809291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 102 - 249
Target Start/End: Complemental strand, 33363502 - 33363354
Alignment:
Q  102 aaacattagcataattcttgaatagttgataaatttttcaaagttgataattggcgagcatgaaaaaagaaatatcgaagatgaaatagcaaattaaact 201  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||| |||  ||||| | ||||| ||||| |   ||||||||| ||||||||| ||    
T  33363502 aaacatgaacataattcttgaatagttgataaatttttcaaagttgatgattcacgagcctcaaaaaggaaatgttttagatgaaatggcaaattaatct 33363403  T
Q  202 tctcttgatcactgaaatccat-ggataatatttttcaacaagagtaca 249  Q
    |||| |||||||| |||||||| ||||||||||||||||||||| ||||    
T  33363402 tctcctgatcactaaaatccatgggataatatttttcaacaagactaca 33363354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 59 - 249
Target Start/End: Complemental strand, 32382071 - 32381880
Alignment:
Q  59 cctatcaatcaataagtattttttggtttgtccattggcagctaaacattagcataattcttgaatagttgataaatttttcaaagttgataattggcga 158  Q
    |||||||| ||| || |||||||||| |||||||||||||    ||||| ||||||||| |||||||||||||||||| |||||||||| | |||| |||    
T  32382071 cctatcaagcaagaaatattttttgggttgtccattggca----aacatgagcataattattgaatagttgataaattcttcaaagttgttgattgacga 32381976  T
Q  159 gcatgaaaaaagaaatatcgaagatgaaatagcaaattaaacttctcttgatcac----tgaaatccat-ggataatatttttcaacaagagtaca 249  Q
    |||| ||||| || || ||||| ||||||| | |||||||  |||||||||||||    | |||  ||| ||||||||||||||||||||||||||    
T  32381975 gcatcaaaaaggagatgtcgaaaatgaaatggaaaattaattttctcttgatcactaattaaaactcatgggataatatttttcaacaagagtaca 32381880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 59 - 249
Target Start/End: Complemental strand, 32436026 - 32435835
Alignment:
Q  59 cctatcaatcaataagtattttttggtttgtccattggcagctaaacattagcataattcttgaatagttgataaatttttcaaagttgataattggcga 158  Q
    |||||||| ||| || |||||||||| |||||||||||||    ||||| ||||||||| |||||||||||||||||| |||||||||| | |||| |||    
T  32436026 cctatcaagcaagaaatattttttgggttgtccattggca----aacatgagcataattattgaatagttgataaattcttcaaagttgttgattgacga 32435931  T
Q  159 gcatgaaaaaagaaatatcgaagatgaaatagcaaattaaacttctcttgatcac----tgaaatccat-ggataatatttttcaacaagagtaca 249  Q
    |||| ||||| || || ||||| ||||||| | |||||||  |||||||||||||    | |||  ||| ||||||||||||||||||||||||||    
T  32435930 gcatcaaaaaggagatgtcgaaaatgaaatggaaaattaattttctcttgatcactaattaaaactcatgggataatatttttcaacaagagtaca 32435835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 18427505 - 18427338
Alignment:
Q  72 aagtattttttggtttgtccattggcagctaaacattagcataattcttgaatagttgataaatttttcaaagttgataattggcgagcatgaaaaaaga 171  Q
    ||||||||||||||||||| | ||| |||||||||| |||| |||||||||||| |||||||||| || ||||||||| ||||| ||| || ||||| ||    
T  18427505 aagtattttttggtttgtctagtggtagctaaacatgagcacaattcttgaataattgataaattctttaaagttgatgattggtgagtatcaaaaagga 18427406  T
Q  172 aatatcgaagatgaaatagcaaattaaacttctcttgatcactgaaatccat-ggataatatttttcaacaagagtacaa 250  Q
    ||| ||||            |||||||  |||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  18427405 aatgtcga------------aaattaattttctcttgatcactaaaatccatgggataatatttttcaacaagagtacaa 18427338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 246
Target Start/End: Original strand, 42466449 - 42466581
Alignment:
Q  114 aattcttgaatagttgataaatttttcaaagttgataattggcgagcatgaaaaaagaaatatcgaagatgaaatagcaaattaaacttctcttgatcac 213  Q
    |||||||| |||||||||||  |||||||||||||   ||| ||||||| || || ||||| | |||| |||||| || || ||| |||||| || |||     
T  42466449 aattcttggatagttgataagcttttcaaagttgaatcttgacgagcatcaataatgaaatgttgaagttgaaatcgcgaagtaatcttctcctgctca- 42466547  T
Q  214 tgaaatccat-ggataatatttttcaacaagagt 246  Q
    |||||||||| |||||||||||||| ||||||||    
T  42466548 tgaaatccatgggataatatttttctacaagagt 42466581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 20099026 - 20098980
Alignment:
Q  13 tgaaatcatcaataattgactcagaactaatatatgcattaatttcc 59  Q
    |||||||||||||||||||||| |||||||||| |||| ||||||||    
T  20099026 tgaaatcatcaataattgactcggaactaatatttgcactaatttcc 20098980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 12868395 - 12868443
Alignment:
Q  13 tgaaatcatcaataattgactcagaactaatatatgcattaatttccct 61  Q
    ||||||||||||||| ||||||||||||||||  |||| ||||||||||    
T  12868395 tgaaatcatcaataactgactcagaactaatacttgcactaatttccct 12868443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 18427698 - 18427646
Alignment:
Q  15 aaatcatcaataattgactcagaactaatatatgcattaatttccctatcaat 67  Q
    |||||||||||||||||||||||||||||  || ||||||||| ||| |||||    
T  18427698 aaatcatcaataattgactcagaactaatgcatacattaatttacctttcaat 18427646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 12868635 - 12868669
Alignment:
Q  109 agcataattcttgaatagttgataaatttttcaaa 143  Q
    |||||||||||||||||||||||||||| ||||||    
T  12868635 agcataattcttgaatagttgataaattcttcaaa 12868669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 33236605 - 33236658
Alignment:
Q  13 tgaaatcatcaataattgactcagaactaatatatgcattaatttccctatcaa 66  Q
    |||||||||||||||| ||||| ||||||||| || || |||||||||| ||||    
T  33236605 tgaaatcatcaataatagactcggaactaatacatacactaatttccctttcaa 33236658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 246
Target Start/End: Original strand, 42479011 - 42479144
Alignment:
Q  114 aattcttgaatagttgataaatttttcaaagttgataattggcgagcatgaaaaaagaaatatcgaagatgaaatagcaaattaaacttctcttgatcac 213  Q
    |||||||| |||||||||||||| |||||  ||||   ||| ||||||| || || |||||   |||| ||| || | ||||||| |||||| || ||      
T  42479011 aattcttggatagttgataaattcttcaattttgaatcttgacgagcatcaataatgaaatgctgaagttgacatcgtaaattaagcttctcctgctcgt 42479110  T
Q  214 tgaaatccat-ggataatatttttcaacaagagt 246  Q
    |||||||||| |||||||||||||| ||||||||    
T  42479111 tgaaatccatgggataatatttttctacaagagt 42479144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 33363755 - 33363715
Alignment:
Q  4 cgagtgagatgaaatcatcaataattgactcagaactaata 44  Q
    |||||||  ||||||||||||||||||| ||||||||||||    
T  33363755 cgagtgacttgaaatcatcaataattgattcagaactaata 33363715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 7860 - 7900
Alignment:
Q  109 agcataattcttgaatagttgataaatttttcaaagttgat 149  Q
    |||||||||||||||||||||||||||| |||||| |||||    
T  7860 agcataattcttgaatagttgataaattcttcaaacttgat 7900  T

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