View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_low_35 (Length: 303)
Name: NF19297_low_35
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 1181107 - 1181319
Alignment:
| Q |
13 |
cattattcctttttcttatccaataaaaacaaacaaaaatgttacaactaattattattccaatcaatcatattcttttcttctctattatattacttat |
112 |
Q |
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| T |
1181107 |
cattattcctttttcttatccaataaaaacaaacaaaaatgttgcaactaattattattccaatcaatcatattcttttcttctctattatattacttat |
1181206 |
T |
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| Q |
113 |
ccatttatttctccgcccnnnnnnngttgcatttgtgacacatttgcttcttaaacnnnnnnnaatcatttgtaactccgccaacaaagcttatgcgtca |
212 |
Q |
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| T |
1181207 |
ccatttatttctccgccctttttttgttgcatttgtgacacatttgcttcttaaactttttttaatcatttgtaactccgccaacaaagcttatgcgtca |
1181306 |
T |
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| Q |
213 |
tcatatccaatct |
225 |
Q |
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||||||||||||| |
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| T |
1181307 |
tcatatccaatct |
1181319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 1181352 - 1181392
Alignment:
| Q |
258 |
ttaactttccacatgtcttgtatctgtgtcattttgtgcct |
298 |
Q |
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| T |
1181352 |
ttaactttccacatgtcttgtatctgtgtcattttgtgcct |
1181392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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