View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_low_37 (Length: 292)
Name: NF19297_low_37
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_low_37 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 8 - 292
Target Start/End: Complemental strand, 48584640 - 48584356
Alignment:
| Q |
8 |
agcagagaagttgaagcaaaatgcaaaaaagtggaagaagaaggcggaggaagctttggccgttggtggatcctctgatcggaatcttgatgagtttatg |
107 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48584640 |
agcagagaagttgaagcaaaatgcaaacaagtggaagaagaaggcggaggaagctttggccgttggtggatcctctgatcggaatcttgatgagtttatg |
48584541 |
T |
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| Q |
108 |
gaagacattaagaaacatgcatcattaattaataatgttaacatctagaacatgtaatatcatccatttcactgtcctttcctcactacatggataagga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48584540 |
gaagacattaagaaacatgcatcattaattaataatgttaacatctagaacatgtaatatcatccatttcactgtcctttcctcactacatggataagga |
48584441 |
T |
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| Q |
208 |
taattttattcatgcagtttatatttttgtgtttgcagttatatatgttgtgtgttttaagaattctaataaaaaataaccaagt |
292 |
Q |
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| T |
48584440 |
taattttattcatgcagtttatatttttgtgtttgcagttatatatgttgtgtgttttaagaattgtaataaaaaataaccaagt |
48584356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 48619037 - 48619150
Alignment:
| Q |
8 |
agcagagaagttgaagcaaaatgcaaaaaagtggaagaagaaggcggaggaagctttggccgttggtggatcctctgatcggaatcttgatgagtttatg |
107 |
Q |
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||||||| |||||||| ||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
48619037 |
agcagaggagttgaagaaaaatgcaatgaagtggaagaagaaggcggatgaagcagtggccattggtggatcctctgatcggaatcttgatgaatttatg |
48619136 |
T |
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| Q |
108 |
gaagacattaagaa |
121 |
Q |
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||||||||| |||| |
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| T |
48619137 |
gaagacattcagaa |
48619150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 11546519 - 11546415
Alignment:
| Q |
18 |
ttgaagcaaaatgcaaaaaagtggaagaagaaggcggaggaagctttggccgttggtggatcctctgatcggaatcttgatgagtttatggaagacatta |
117 |
Q |
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|||||| ||||||||| |||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
11546519 |
ttgaagaaaaatgcaataaagtggaagaaaaaggctgaggaagcagtggccattggtggatcctctgatcggaatcttgatgaatttttggaagacatta |
11546420 |
T |
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| Q |
118 |
agaaa |
122 |
Q |
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||||| |
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| T |
11546419 |
agaaa |
11546415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 48628223 - 48628108
Alignment:
| Q |
8 |
agcagagaagttgaagcaaaatgcaaaaaagtggaagaagaaggcggaggaagctttggccgttggtggatcctctgatcggaatcttgatgagtttatg |
107 |
Q |
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||||||| |||||||| ||||||||| |||||||||||| |||| |||||||| ||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
48628223 |
agcagaggagttgaagaaaaatgcaatgaagtggaagaaggaggcagaggaagcagtggccgttggtggatcctctgattggaatcttgatgcatttatg |
48628124 |
T |
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| Q |
108 |
gaagacattaagaaac |
123 |
Q |
| |
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||||||||||| |||| |
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| T |
48628123 |
gaagacattaaaaaac |
48628108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 48666466 - 48666350
Alignment:
| Q |
8 |
agcagagaagttgaagcaaaatgcaaaaaagtggaagaagaaggcggaggaagctttggccgttggtggatcctctgatcggaatcttgatgagtttatg |
107 |
Q |
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|||||||| ||||||| ||||||||| |||| ||| ||| |||||||||||| |||| |||||||| ||||| || || ||||||||| |||||| |
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| T |
48666466 |
agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagtggcggttggtggttcctcggaccgacatcttgatgcatttatg |
48666367 |
T |
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| Q |
108 |
gaagacattaagaaaca |
124 |
Q |
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||||||||||||||||| |
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| T |
48666366 |
gaagacattaagaaaca |
48666350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 48655890 - 48655786
Alignment:
| Q |
8 |
agcagagaagttgaagcaaaatgcaaaaaagtggaagaagaaggcggaggaagctttggccgttggtggatcctctgatcggaatcttgatgagtttatg |
107 |
Q |
| |
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||||||| |||||||| ||||||||| |||||||||||| |||||||| || | ||||| ||||||||||| || || ||||||||| ||||| |
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| T |
48655890 |
agcagaggagttgaagaaaaatgcaatcaagtggaagaaggcagcggaggatgcagttgccgtaggtggatcctccgaccgatatcttgatgcatttatc |
48655791 |
T |
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| Q |
108 |
gaaga |
112 |
Q |
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||||| |
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| T |
48655790 |
gaaga |
48655786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 19666396 - 19666506
Alignment:
| Q |
11 |
agagaagttgaagcaaaatgcaaaaaagtggaagaagaaggcggaggaagctttggccgttggtggatcctctgatcggaatcttgatgagtttatggaa |
110 |
Q |
| |
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|||| |||||||||||||||||| ||||||||||| |||||||||||| |||| ||||| ||||||||||||||||||||||| ||||||||| |
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| T |
19666396 |
agaggagttgaagcaaaatgcaatcaagtggaagaaagcggcggaggaagcggtggcgaccggtggttcctctgatcggaatcttgatgaatttatggaa |
19666495 |
T |
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| Q |
111 |
gacattaagaa |
121 |
Q |
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||||||||||| |
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| T |
19666496 |
gacattaagaa |
19666506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 27227453 - 27227341
Alignment:
| Q |
8 |
agcagagaagttgaagcaaaatgcaaaaaagtggaagaagaaggcggaggaagctttggccgttggtggatcctctgatcggaatcttgatgagtttatg |
107 |
Q |
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|||||||| |||||||||||| ||| |||||||||||| ||||||| || | || || ||||| |||||||||||| || |||||| |||||| |
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| T |
27227453 |
agcagagatgttgaagcaaaacacaatcaagtggaagaaggcagcggaggctgcagttgcggtaggtggttcctctgatcggcatattgatgcatttatg |
27227354 |
T |
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| Q |
108 |
gaagacattaaga |
120 |
Q |
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||||||||||||| |
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| T |
27227353 |
gaagacattaaga |
27227341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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