View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19297_low_38 (Length: 282)

Name: NF19297_low_38
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19297_low_38
NF19297_low_38
[»] chr7 (13 HSPs)
chr7 (28-274)||(47233833-47234078)
chr7 (143-274)||(25419586-25419717)
chr7 (143-274)||(39066881-39067012)
chr7 (143-274)||(5768075-5768206)
chr7 (18-274)||(44393541-44393799)
chr7 (64-116)||(47142363-47142416)
chr7 (18-66)||(39063950-39063998)
chr7 (18-65)||(25419824-25419871)
chr7 (18-65)||(39067132-39067179)
chr7 (18-69)||(39073316-39073367)
chr7 (171-229)||(47932975-47933033)
chr7 (18-59)||(5768333-5768374)
chr7 (20-69)||(17026574-17026623)
[»] chr5 (6 HSPs)
chr5 (28-274)||(21605078-21605323)
chr5 (18-274)||(37301999-37302255)
chr5 (143-274)||(36991043-36991174)
chr5 (18-66)||(10180441-10180489)
chr5 (18-59)||(11381260-11381301)
chr5 (18-59)||(36990875-36990916)
[»] chr8 (11 HSPs)
chr8 (18-274)||(10186229-10186485)
chr8 (28-274)||(8150502-8150748)
chr8 (18-274)||(4138192-4138455)
chr8 (18-274)||(20171831-20172089)
chr8 (18-215)||(11428187-11428386)
chr8 (222-274)||(918966-919018)
chr8 (18-69)||(14597503-14597554)
chr8 (18-67)||(32663981-32664030)
chr8 (245-274)||(11428153-11428182)
chr8 (19-59)||(9083154-9083194)
chr8 (19-59)||(31686159-31686199)
[»] chr4 (14 HSPs)
chr4 (18-274)||(21802771-21803027)
chr4 (18-274)||(34737810-34738066)
chr4 (28-274)||(53830516-53830766)
chr4 (19-274)||(21632780-21633036)
chr4 (143-274)||(2505012-2505143)
chr4 (146-274)||(46092306-46092434)
chr4 (146-274)||(46134831-46134959)
chr4 (90-269)||(2500660-2500838)
chr4 (77-274)||(5430644-5430844)
chr4 (113-274)||(20036253-20036414)
chr4 (22-66)||(27256579-27256623)
chr4 (18-66)||(51868295-51868343)
chr4 (18-65)||(2505250-2505297)
chr4 (171-229)||(43943462-43943520)
[»] chr3 (11 HSPs)
chr3 (28-274)||(35870228-35870474)
chr3 (86-274)||(48266209-48266395)
chr3 (18-274)||(26215158-26215416)
chr3 (143-274)||(52349726-52349857)
chr3 (19-66)||(10176722-10176769)
chr3 (18-65)||(346610-346657)
chr3 (18-65)||(52349560-52349607)
chr3 (18-68)||(3744468-3744518)
chr3 (171-229)||(5884423-5884481)
chr3 (171-229)||(54945777-54945835)
chr3 (19-67)||(26297680-26297728)
[»] chr2 (10 HSPs)
chr2 (22-274)||(41646719-41646969)
chr2 (143-274)||(7574102-7574233)
chr2 (143-274)||(16668697-16668828)
chr2 (222-274)||(43564238-43564290)
chr2 (222-274)||(29455448-29455500)
chr2 (18-66)||(37904094-37904142)
chr2 (18-65)||(7574352-7574399)
chr2 (18-65)||(16668935-16668982)
chr2 (18-69)||(22990025-22990076)
chr2 (19-59)||(6414358-6414398)
[»] scaffold0516 (1 HSPs)
scaffold0516 (77-274)||(3182-3378)
[»] chr1 (8 HSPs)
chr1 (77-274)||(23726036-23726231)
chr1 (143-274)||(13786229-13786360)
chr1 (77-274)||(22912539-22912735)
chr1 (143-274)||(25807783-25807914)
chr1 (18-69)||(39621648-39621699)
chr1 (18-65)||(13786063-13786110)
chr1 (18-65)||(25808033-25808080)
chr1 (18-59)||(29679051-29679092)
[»] chr6 (7 HSPs)
chr6 (143-274)||(13433464-13433595)
chr6 (18-66)||(18877366-18877414)
chr6 (18-65)||(13433714-13433761)
chr6 (239-274)||(16712120-16712155)
chr6 (171-229)||(16857232-16857290)
chr6 (171-205)||(26615346-26615380)
chr6 (171-205)||(26721274-26721308)
[»] scaffold0316 (1 HSPs)
scaffold0316 (18-66)||(5494-5542)
[»] scaffold0045 (1 HSPs)
scaffold0045 (18-59)||(1376-1417)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 28 - 274
Target Start/End: Complemental strand, 47234078 - 47233833
Alignment:
Q  28 attctaaactacattttgcctatgtgtcaccttaccaattccacatttttaactaatctctcatacttatgtcatgtgactctctttttgttcttaattt 127  Q
    ||||||||||| ||||| |||||||||||| |||||||| || | ||| ||||||||||||||||||||||||||||| || |||||| |||||| |||     
T  47234078 attctaaactatatttttcctatgtgtcactttaccaatgccccctttctaactaatctctcatacttatgtcatgtggctatctttt-gttcttgattc 47233980  T
Q  128 tttactagttattccttactatctatctttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagttacacaataaaagcattata 227  Q
    ||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||    
T  47233979 tttactagtcattccttactatctatctttcattttccatcagttgcaaaaacacttcatttacttcacttcatgcaagttacacaatgaatgcattata 47233880  T
Q  228 atccattttattaatattgaggggttacattttaaaattattcatat 274  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  47233879 atccattttattaatattaaggggttacattttaaaattattcatat 47233833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 143 - 274
Target Start/End: Complemental strand, 25419717 - 25419586
Alignment:
Q  143 ttactatctatctttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagttacacaataaaagcattataatccattttattaat 242  Q
    ||||||||||||||||||||| |||| ||| ||||||| || ||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||    
T  25419717 ttactatctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 25419618  T
Q  243 attgaggggttacattttaaaattattcatat 274  Q
    ||||||||||||||||||||||||||||||||    
T  25419617 attgaggggttacattttaaaattattcatat 25419586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 143 - 274
Target Start/End: Complemental strand, 39067012 - 39066881
Alignment:
Q  143 ttactatctatctttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagttacacaataaaagcattataatccattttattaat 242  Q
    ||||||||||||||||||||| |||| ||| ||||||| || ||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||    
T  39067012 ttactatctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 39066913  T
Q  243 attgaggggttacattttaaaattattcatat 274  Q
    ||||||||||||||||||||||||||||||||    
T  39066912 attgaggggttacattttaaaattattcatat 39066881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 143 - 274
Target Start/End: Complemental strand, 5768206 - 5768075
Alignment:
Q  143 ttactatctatctttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagttacacaataaaagcattataatccattttattaat 242  Q
    ||||||||||||||||||||| |||| ||| ||||||| || ||||||||||||||| ||||||||||||||| || ||||||||||| |||||||||||    
T  5768206 ttactatctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatcaattttattaat 5768107  T
Q  243 attgaggggttacattttaaaattattcatat 274  Q
    ||||||||||||||||||||||||||||||||    
T  5768106 attgaggggttacattttaaaattattcatat 5768075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 44393541 - 44393799
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaat-tccacatttt-taactaatctctcatacttatgtcatgtgactctctttt 115  Q
    ||||| ||| ||| ||||||||||||||| |||||||||| | || ||| |   | |||| |||||||| | | |||||||||||||||| |||||||||    
T  44393541 atatatatgtattttaaactacattttgcttatgtgtcacttcactaatattttctttttgtaactaattttttatacttatgtcatgtggctctctttt 44393640  T
Q  116 tgttcttaattttttactagttattccttactatcta-tctttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagttacacaa 214  Q
     |||||| ||| ||||||||| ||| ||||||||||| ||||||||||  ||||  ||| |||||| ||  |||||||||||||| || |||||||||||    
T  44393641 -gttcttgattctttactagtcatttcttactatctaatctttcatttcccatcaattggaaaaactctctatttacttcacttcatggaagttacacaa 44393739  T
Q  215 taaaagcattataatccattttattaatattgaggggttacattttaaaattattcatat 274  Q
    | || | |||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  44393740 tgaatgtattataatccattttattaatagtgaggggtttcattttaaaattattcatat 44393799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 47142416 - 47142363
Alignment:
Q  64 aattccacatttt-taactaatctctcatacttatgtcatgtgactctcttttt 116  Q
    |||||| |||||| || ||||||||||||||||| |||||||||||||||||||    
T  47142416 aattccccattttctagctaatctctcatacttacgtcatgtgactctcttttt 47142363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 39063998 - 39063950
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaat 66  Q
    ||||||||| ||||||| ||||||||||| ||||||||| |||||||||    
T  39063998 atatacatgtattctaacctacattttgcttatgtgtcatcttaccaat 39063950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 25419871 - 25419824
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaa 65  Q
    ||||||||| ||||||| ||||||||| |||||||||||||| |||||    
T  25419871 atatacatgtattctaacctacatttttcctatgtgtcacctcaccaa 25419824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 39067179 - 39067132
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaa 65  Q
    ||||||||| ||||||| ||||||||| |||||||||||||| |||||    
T  39067179 atatacatgtattctaacctacatttttcctatgtgtcacctcaccaa 39067132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 39073367 - 39073316
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaattcc 69  Q
    ||||||||| ||||||| ||||| ||||| |||||||||||| |||||||||    
T  39073367 atatacatgtattctaacctacactttgcttatgtgtcacctcaccaattcc 39073316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 47933033 - 47932975
Alignment:
Q  171 ttgcaaaaacacttcatttacttcacttcctgcaagttacacaataaaagcattataat 229  Q
    |||||||| |||| ||||||||||||||| ||||||||  ||||| || ||||||||||    
T  47933033 ttgcaaaagcactgcatttacttcacttcatgcaagttgtacaatgaatgcattataat 47932975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 5768374 - 5768333
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcacct 59  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||    
T  5768374 atatacatgtattctaacctacatttttcctatgtgtcacct 5768333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 17026574 - 17026623
Alignment:
Q  20 atacatgcattctaaactacattttgcctatgtgtcaccttaccaattcc 69  Q
    ||||||| ||||||| ||||| ||||| |||||||||||| |||||||||    
T  17026574 atacatgtattctaagctacactttgcttatgtgtcacctcaccaattcc 17026623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 28 - 274
Target Start/End: Complemental strand, 21605323 - 21605078
Alignment:
Q  28 attctaaactacattttgcctatgtgtcaccttaccaattccacatttttaactaatctctcatacttatgtcatgtgactctctttttgttcttaattt 127  Q
    ||||||| ||||||||| ||||||||||||||||||||| || | ||| ||||||||||||||||||||||||||||| || |||||| |||||| |||     
T  21605323 attctaagctacatttttcctatgtgtcaccttaccaataccccctttctaactaatctctcatacttatgtcatgtggctatctttt-gttcttgattc 21605225  T
Q  128 tttactagttattccttactatctatctttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagttacacaataaaagcattata 227  Q
    |||| |||| |||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||| ||||||||||||||| || ||||||||    
T  21605224 tttattagtcattccttactatctatctttcattttccattggctgcaaaaacacttcatttacttcacttcatgcaagttacacaatgaatgcattata 21605125  T
Q  228 atccattttattaatattgaggggttacattttaaaattattcatat 274  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  21605124 atccattttattaatattgaggggttaaattttaaaattattcatat 21605078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 37302255 - 37301999
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaattcca-catttttaactaatctctcatacttatgtcatgtgactctcttttt 116  Q
    ||||||||| ||||||| ||||||||||| |||||||||||||||||||  |  | ||| |||||||||||| ||||||||| ||||||  ||||||||     
T  37302255 atatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgacttcctttctaactaatctcttatacttatgccatgtggatctctttt- 37302157  T
Q  117 gttcttaattttttactagttattccttactatctatctttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagttacacaata 216  Q
    |||||| ||| ||||||||  ||||| ||| |||||||||||||||  ||||  ||||||||||||| ||||||||||||||| |||||||||||||||     
T  37302156 gttcttgattctttactagccattccgtacaatctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaatg 37302057  T
Q  217 aaagcattataatccattttattaatattgaggggttacattttaaaattattcatat 274  Q
    || |||||||||||||||||||||||| ||  ||||||||||||||||||||||||||    
T  37302056 aatgcattataatccattttattaataatggagggttacattttaaaattattcatat 37301999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 143 - 274
Target Start/End: Original strand, 36991043 - 36991174
Alignment:
Q  143 ttactatctatctttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagttacacaataaaagcattataatccattttattaat 242  Q
    ||||||||||||||||||||| |||| ||| ||||||| || ||||||||||||||| ||||||||||||||| || ||||||||||| |||||||||||    
T  36991043 ttactatctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatctattttattaat 36991142  T
Q  243 attgaggggttacattttaaaattattcatat 274  Q
    ||||||||||||||||||||||||||||||||    
T  36991143 attgaggggttacattttaaaattattcatat 36991174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 10180441 - 10180489
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaat 66  Q
    ||||||||| ||||||| ||||||||||| |||||||||||| ||||||    
T  10180441 atatacatgtattctaacctacattttgcttatgtgtcacctcaccaat 10180489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 11381260 - 11381301
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcacct 59  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||    
T  11381260 atatacatgtattctaacctacattttgcctatgtgtaacct 11381301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 36990875 - 36990916
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcacct 59  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||    
T  36990875 atatacatgtattctaacctacatttttcctatgtgtcacct 36990916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 146; Significance: 6e-77; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 10186229 - 10186485
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaattccacatttt-taactaatctctcatacttatgtcatgtgactctcttttt 116  Q
    ||||||||| ||||||| |||||||| |||||||||||||||||||||| || |  ||| |||||||| |||| |||||||| || |||||||||||||     
T  10186229 atatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttctaactaatatctcttacttatgccaagtgactctctttt- 10186327  T
Q  117 gttcttaattttttactagttattccttactatctatctttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagttacacaata 216  Q
    |||||| ||| ||||||||| |||||||||||||||||||||||||   ||| |||||||||||| ||||||||| ||||||| |||||||||||||||     
T  10186328 gttcttgattctttactagtcattccttactatctatctttcatttcctatcagttgcaaaaacatttcatttacctcacttcttgcaagttacacaatg 10186427  T
Q  217 aaagcattataatccattttattaatattgaggggttacattttaaaattattcatat 274  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10186428 aatgcattataatccattttattaatattgaggggttacattttaaaattgttcatat 10186485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 28 - 274
Target Start/End: Complemental strand, 8150748 - 8150502
Alignment:
Q  28 attctaaactacattttgcctatgtgtcaccttaccaattccacatttt-taactaatctctcatacttatgtcatgtgactctctttttgttcttaatt 126  Q
    ||||||| ||||||||||| ||||||||||||||||||| || |  ||| |||||||||||||||||||||| |||||||||| ||||| |||||| |||    
T  8150748 attctaagctacattttgcatatgtgtcaccttaccaatgcccccctttctaactaatctctcatacttatgccatgtgactcactttt-gttcttgatt 8150650  T
Q  127 ttttactagttattccttactatctatctttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagttacacaataaaagcattat 226  Q
     ||||||||  ||| |||||||||||||||||||||  |||| |||||||||||||| ||||||||||||||  ||| ||||||||||| || |||||||    
T  8150649 ctttactagccatttcttactatctatctttcatttcccatcagttgcaaaaacactccatttacttcactttatgcgagttacacaatgaatgcattat 8150550  T
Q  227 aatccattttattaatattgaggggttacattttaaaattattcatat 274  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  8150549 aatcaattttattaatattgaggggttacattttaaaattattcatat 8150502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 4138192 - 4138455
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaattccacatttt-taactaatctctcatacttatgtcatgtgactctcttttt 116  Q
    ||||||||| ||||||| |||||||| |||||||||||||||||||||| || |  ||| |||||||||||||||||||||| || ||| |||||||||     
T  4138192 atatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttctaactaatctctcatacttatgccaagtggctctctttt- 4138290  T
Q  117 gttcttaattttttactagttattccttactatctatct-------ttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagtta 209  Q
    |||||| ||| ||||||||  ||||  ||||||||||||       |||||||   ||| |||||||||||| ||||||||||||||||| |||||||||    
T  4138291 gttcttgattctttactagccattctctactatctatctttcatctttcatttcctatccgttgcaaaaacatttcatttacttcacttcttgcaagtta 4138390  T
Q  210 cacaataaaagcattataatccattttattaatattgaggggttacattttaaaattattcatat 274  Q
    |||||| || ||||||||||| |||||||||||||||||||||||| |||||||||| |||||||    
T  4138391 cacaatgaatgcattataatctattttattaatattgaggggttacgttttaaaattgttcatat 4138455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 20171831 - 20172089
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaat-tccacatttt-taactaatctctcatacttatgtcatgtgactctctttt 115  Q
    ||||| ||| ||| ||||||||||||||| |||||||||| | || ||| |   | |||| |||||||| | | |||||||||||||||| |||||||||    
T  20171831 atatatatgtattttaaactacattttgcttatgtgtcacttcactaatattttctttttgtaactaattttttatacttatgtcatgtggctctctttt 20171930  T
Q  116 tgttcttaattttttactagttattccttactatcta-tctttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagttacacaa 214  Q
     |||||| ||| ||||||||| ||| ||||||||||| ||||||||||  ||||  ||| |||||| ||  |||||||||||||| || |||||||||||    
T  20171931 -gttcttgattctttactagtcatttcttactatctaatctttcatttcccatcaattggaaaaactctctatttacttcacttcatggaagttacacaa 20172029  T
Q  215 taaaagcattataatccattttattaatattgaggggttacattttaaaattattcatat 274  Q
    | || | |||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  20172030 tgaatgtattataatccattttattaatagtgaggggtttcattttaaaattattcatat 20172089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 11428386 - 11428187
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaat--tccacatttttaactaatctctcatacttatgtcatgtgactctctttt 115  Q
    ||||||||| ||||||| ||||||||||| |||||||||||| || |||  | | | ||| |||||||| | ||||||||||| | |||| |||||||||    
T  11428386 atatacatgtattctaagctacattttgcttatgtgtcacctcactaatatttcccttttgtaactaatttttcatacttatgccttgtggctctctttt 11428287  T
Q  116 tgttcttaattttttactagttattccttactatcta-tctttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagttacacaa 214  Q
     |||||| ||| ||||||||  ||||||||||||||| ||||||||||| ||||  ||| ||||||  | ||||||||||||||| || |||||||||||    
T  11428286 -gttcttgattctttactagccattccttactatctaatctttcattttccatcaattggaaaaactatccatttacttcacttcatggaagttacacaa 11428188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 919018 - 918966
Alignment:
Q  222 attataatccattttattaatattgaggggttacattttaaaattattcatat 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  919018 attataatccattttattaatattgaggggttacattttaaaattattcatat 918966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 14597554 - 14597503
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaattcc 69  Q
    ||||||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  14597554 atatacatgtattctaagctacattttgcctatatgtcaccttaccaattcc 14597503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 32663981 - 32664030
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaatt 67  Q
    ||||||||| ||||||||||||| ||||| |||||||||||| |||||||    
T  32663981 atatacatgtattctaaactacactttgcttatgtgtcacctcaccaatt 32664030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 274
Target Start/End: Complemental strand, 11428182 - 11428153
Alignment:
Q  245 tgaggggttacattttaaaattattcatat 274  Q
    ||||||||||||||||||||||||||||||    
T  11428182 tgaggggttacattttaaaattattcatat 11428153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 9083194 - 9083154
Alignment:
Q  19 tatacatgcattctaaactacattttgcctatgtgtcacct 59  Q
    |||||||| ||||||||||||| ||||| ||||||||||||    
T  9083194 tatacatgtattctaaactacactttgcttatgtgtcacct 9083154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 31686159 - 31686199
Alignment:
Q  19 tatacatgcattctaaactacattttgcctatgtgtcacct 59  Q
    |||||||| |||||||||||||| |||| ||||||||||||    
T  31686159 tatacatgtattctaaactacatattgcttatgtgtcacct 31686199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 21802771 - 21803027
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaattccacatttt-taactaatctctcatacttatgtcatgtgactctcttttt 116  Q
    ||||||||| ||||||| |||||||| |||||||||||||||||||||| || |  ||| |||||||||||||||||||||| || ||| |||||||||     
T  21802771 atatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttctaactaatctctcatacttatgccaagtggctctctttt- 21802869  T
Q  117 gttcttaattttttactagttattccttactatctatctttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagttacacaata 216  Q
    |||||| ||| ||||||||  |||| ||||||||||||||||||||   ||| |||||||||||| ||||||||||||||||| |||||||||||||||     
T  21802870 gttcttgattctttactagccattcattactatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatg 21802969  T
Q  217 aaagcattataatccattttattaatattgaggggttacattttaaaattattcatat 274  Q
    || |||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  21802970 aatgcattataatccattttattaatattgaggggttacgttttaaaattgttcatat 21803027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 34738066 - 34737810
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaattccacatttt-taactaatctctcatacttatgtcatgtgactctcttttt 116  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||||||| || |  ||| |||||||||||||||||||||| ||||||  ||||||||     
T  34738066 atatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgcctccctttctaactaatctctcatacttatgccatgtggatctctttt- 34737968  T
Q  117 gttcttaattttttactagttattccttactatctatctttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagttacacaata 216  Q
    |||||| ||| ||||||||  ||||| ||| |||||||||||||||| |||| |||||||||||||| ||| ||||||||||| |||||||||||||||     
T  34737967 gttcttgattctttactagccattccgtacaatctatctttcattttccatcagttgcaaaaacactccatctacttcacttcatgcaagttacacaatg 34737868  T
Q  217 aaagcattataatccattttattaatattgaggggttacattttaaaattattcatat 274  Q
    || |||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  34737867 aatgcattataatccattttattaacaatgaggggttacattttaaaattattcatat 34737810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 28 - 274
Target Start/End: Complemental strand, 53830766 - 53830516
Alignment:
Q  28 attctaaactacattttgcctatgtgtcaccttaccaattccaca-tttttaactaatctctcatacttatgtcatgtgactctctttttgttcttaatt 126  Q
    ||||||| ||||||||| |||||||||||||||||| || || |  |||||||||||||||||||||||||| |||||| || |||||| |||||| |||    
T  53830766 attctaagctacatttttcctatgtgtcaccttaccgatgcccccctttttaactaatctctcatacttatgccatgtggctatctttt-gttcttgatt 53830668  T
Q  127 ttttactagttattccttactatctatct----ttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagttacacaataaaagca 222  Q
     ||||||||   |||||||||||||||||    |||||||| |||||||||||||||||||  |||||||||||||| ||||||||||||||| || |||    
T  53830667 ctttactagccgttccttactatctatctatctttcattttccatcggttgcaaaaacactctatttacttcacttcatgcaagttacacaatgaatgca 53830568  T
Q  223 ttataatccattttattaatattgaggggttacattttaaaattattcatat 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53830567 ttataatccattttattaatattgaggggttacattttaaaattattcatat 53830516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 21633036 - 21632780
Alignment:
Q  19 tatacatgcattctaaactacattttgcctatgtgtcaccttaccaattccacatttt-taactaatctctcatacttatgtcatgtgactctctttttg 117  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||| || |  ||| |||||||||||||||||||||| || ||| | ||||||| |    
T  21633036 tatacatgtattctaagctacattttgcctatgtgtcaccttaccaatacccccctttctaactaatctctcatacttatgccaagtggcgctctttt-g 21632938  T
Q  118 ttcttaattttttactagttattccttactatctatctttcatttttcatcggttgcaaaaa-cacttcatttacttcacttcctgcaagttacacaata 216  Q
    ||||| ||| ||||||||  ||||||||||||||||||||||||||  ||| |||||||||| || ||||||||||||||||| |||||||||||| ||     
T  21632937 ttcttgattctttactagccattccttactatctatctttcattttctatcagttgcaaaaaacatttcatttacttcacttcttgcaagttacacgatg 21632838  T
Q  217 aaagcattataatccattttattaatattgaggggttacattttaaaattattcatat 274  Q
    || ||||||| |||||||||||||||||||||||||||  |||||||||| |||||||    
T  21632837 aatgcattatgatccattttattaatattgaggggttatgttttaaaattgttcatat 21632780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 143 - 274
Target Start/End: Complemental strand, 2505143 - 2505012
Alignment:
Q  143 ttactatctatctttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagttacacaataaaagcattataatccattttattaat 242  Q
    ||||||||||||||||||||| |||| ||| ||||||| || ||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||    
T  2505143 ttactatctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 2505044  T
Q  243 attgaggggttacattttaaaattattcatat 274  Q
    ||||||||||||||||||||||||||||||||    
T  2505043 attgaggggttacattttaaaattattcatat 2505012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 146 - 274
Target Start/End: Original strand, 46092306 - 46092434
Alignment:
Q  146 ctatctatctttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagttacacaataaaagcattataatccattttattaatatt 245  Q
    |||||||||||||||||| |||||||| |||||||    ||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||    
T  46092306 ctatctatctttcattttccatcggttacaaaaacttgccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatatt 46092405  T
Q  246 gaggggttacattttaaaattattcatat 274  Q
    |||||||||||||||||||||||||||||    
T  46092406 gaggggttacattttaaaattattcatat 46092434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 146 - 274
Target Start/End: Original strand, 46134831 - 46134959
Alignment:
Q  146 ctatctatctttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagttacacaataaaagcattataatccattttattaatatt 245  Q
    |||||||||||||||||| |||||||| |||||||    ||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||    
T  46134831 ctatctatctttcattttccatcggttacaaaaacttgccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatatt 46134930  T
Q  246 gaggggttacattttaaaattattcatat 274  Q
    |||||||||||||||||||||||||||||    
T  46134931 gaggggttacattttaaaattattcatat 46134959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 90 - 269
Target Start/End: Complemental strand, 2500838 - 2500660
Alignment:
Q  90 atacttatgtcatgtgactctctttttgttcttaattttttactagttattccttactatctatctttcatttttcatcggttgcaaaaacacttcattt 189  Q
    ||||||||| |||||| ||||||||| |||||| |||   ||||| | |||||||||||| ||||||||||||  |||| |||||||||| ||  |||||    
T  2500838 atacttatgccatgtggctctctttt-gttcttgattccctactaatcattccttactatttatctttcatttcccatccgttgcaaaaatacaccattt 2500740  T
Q  190 acttcacttcctgcaagttacacaataaaagcattataatccattttattaatattgaggggttacattttaaaattatt 269  Q
    |||||||||| |||||||| |||||| || ||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  2500739 acttcacttcatgcaagttgcacaatgaatgcattataatccattttattaatattgtgcggttacattttaaaattatt 2500660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 77 - 274
Target Start/End: Original strand, 5430644 - 5430844
Alignment:
Q  77 taactaatctctcatacttatgtcatgtgactctctttttgttcttaattttttactagttattccttactatcta-tctttcatttttcatcggttgca 175  Q
    |||||||| | ||||||||||| |||||| ||||||||| |||||| ||| ||||||||  ||||||||||||||| ||||||||||  ||||  ||| |    
T  5430644 taactaatttttcatacttatgccatgtggctctctttt-gttcttgattctttactagccattccttactatctaatctttcatttcccatcaattgga 5430742  T
Q  176 aaaacacttcatttacttcacttcctgcaagttacacaataaaagcattataatccattttat---taatattgaggggttacattttaaaattattcat 272  Q
    ||||| || ||||||||||||||| || |||||||||||| || | |||||||||||||||||   ||||| ||||||||||||||||||||||||||||    
T  5430743 aaaactctccatttacttcacttcatggaagttacacaatgaatgtattataatccattttattaataatagtgaggggttacattttaaaattattcat 5430842  T
Q  273 at 274  Q
    ||    
T  5430843 at 5430844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 113 - 274
Target Start/End: Original strand, 20036253 - 20036414
Alignment:
Q  113 ttttgttcttaattttttactagttattccttactatctatctttcatttttcatcggttgcaaaa-acacttcatttacttcacttcctgcaagttaca 211  Q
    ||||||||||| || ||||||||| |||| ||||||||||||||||||||  |||| | || |||| |||||||| |||||||||||| |||||||| ||    
T  20036253 ttttgttctta-ttctttactagtcattcattactatctatctttcatttcccatcagatgtaaaaaacacttcagttacttcacttcatgcaagttgca 20036351  T
Q  212 caataaaagcattataatccattttattaatattgaggggttacattttaaaattattcatat 274  Q
     ||| || |||||||||| ||||||||||||||||||  ||||||||||||||||| ||||||    
T  20036352 taatgaatgcattataattcattttattaatattgagcagttacattttaaaattaatcatat 20036414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 27256579 - 27256623
Alignment:
Q  22 acatgcattctaaactacattttgcctatgtgtcaccttaccaat 66  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||||    
T  27256579 acatgtattctaacctacatttttcctatgtgtcaccttaccaat 27256623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 51868295 - 51868343
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaat 66  Q
    ||||||||| |||||||  |||||||||| |||||||||||||||||||    
T  51868295 atatacatgtattctaacatacattttgcttatgtgtcaccttaccaat 51868343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 2505297 - 2505250
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaa 65  Q
    ||||||||| ||||||| ||||||||| |||||||||||||| |||||    
T  2505297 atatacatgtattctaacctacatttttcctatgtgtcacctcaccaa 2505250  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 43943462 - 43943520
Alignment:
Q  171 ttgcaaaaacacttcatttacttcacttcctgcaagttacacaataaaagcattataat 229  Q
    |||||||| |||| ||||||||||||||| ||||||||  ||||| || ||||||||||    
T  43943462 ttgcaaaagcactgcatttacttcacttcatgcaagttgtacaatgaatgcattataat 43943520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 28 - 274
Target Start/End: Original strand, 35870228 - 35870474
Alignment:
Q  28 attctaaactacattttgcctatgtgtcaccttaccaattccacatttt-taactaatctctcatacttatgtcatgtgactctctttttgttcttaatt 126  Q
    ||||||| |||||||||  |||||||||||||||||||| || |  ||| |||||||||||||||||||||| |||||| || ||||||  ||||| |||    
T  35870228 attctaagctacattttttctatgtgtcaccttaccaatgcccccctttctaactaatctctcatacttatgccatgtggctatcttttc-ttcttgatt 35870326  T
Q  127 ttttactagttattccttactatctatctttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagttacacaataaaagcattat 226  Q
     ||||||||| |||||||||||||||||||||||||| |||| ||||| ||||| || ||||||||||||||| ||||||||||||||| || |||||||    
T  35870327 ctttactagtcattccttactatctatctttcattttccatcagttgcgaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattat 35870426  T
Q  227 aatccattttattaatattgaggggttacattttaaaattattcatat 274  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  35870427 aatccattttattaatattgagaggttacattttaaaattattcatat 35870474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 86 - 274
Target Start/End: Original strand, 48266209 - 48266395
Alignment:
Q  86 tctcatacttatgtcatgtgactctctttttgttcttaattttttactagttattccttactatctatctttcatttttcatcggttgcaaaaacacttc 185  Q
    |||||||||||||||||||| || ||||||  ||||| ||| ||||||||| |||||||||||||||||||||||||| |||| ||||||||||| || |    
T  48266209 tctcatacttatgtcatgtggctatcttttc-ttcttgattctttactagtcattccttactatctatctttcattttccatcagttgcaaaaactctcc 48266307  T
Q  186 atttacttcacttcctgcaagttacacaataaaagcattataatccattttattaatattgaggggttacattttaaaattattcatat 274  Q
    |||||||| ||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48266308 atttactt-acttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcatat 48266395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 26215158 - 26215416
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaat--tccacatttttaactaatctctcatacttatgtcatgtgactctctttt 115  Q
    ||||||||| ||||||||||||||||| | ||||||| || | ||||||  | | | ||| |||||||||||||||||||||| |||||| |||||||||    
T  26215158 atatacatgtattctaaactacattttacttatgtgttacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctctttt 26215257  T
Q  116 tgttcttaattttttactagttattccttactatcta-tctttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagttacacaa 214  Q
     |||||| ||| ||| ||||  ||||||||||||||| ||||||||||| ||||  ||| |||||| || ||||||||||||||| || |||||||||||    
T  26215258 -gttcttgattctttgctagccattccttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaa 26215356  T
Q  215 taaaagcattataatccattttattaatattgaggggttacattttaaaattattcatat 274  Q
    | || |  |||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  26215357 tgaatgtgttataatccattttattaatagcgaggggttacattttaaaattattcatat 26215416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 143 - 274
Target Start/End: Original strand, 52349726 - 52349857
Alignment:
Q  143 ttactatctatctttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagttacacaataaaagcattataatccattttattaat 242  Q
    ||||||||||||||||||||| |||| ||| ||||||| || ||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||    
T  52349726 ttactatctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 52349825  T
Q  243 attgaggggttacattttaaaattattcatat 274  Q
    ||||||||||||||||||||||||||| ||||    
T  52349826 attgaggggttacattttaaaattatttatat 52349857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 10176769 - 10176722
Alignment:
Q  19 tatacatgcattctaaactacattttgcctatgtgtcaccttaccaat 66  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||    
T  10176769 tatacatgtattctaaactacatttttcctatgtgtcaccttaccaat 10176722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 346610 - 346657
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaa 65  Q
    ||||||||| ||||||||||||||||||| ||||||||| || |||||    
T  346610 atatacatgtattctaaactacattttgcttatgtgtcatctcaccaa 346657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 52349560 - 52349607
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaa 65  Q
    ||||||||| ||||||| ||||||||| |||||||||||||| |||||    
T  52349560 atatacatgtattctaacctacatttttcctatgtgtcacctcaccaa 52349607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 3744518 - 3744468
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaattc 68  Q
    ||||||||| ||||||| ||||| ||||| |||||||||||| ||||||||    
T  3744518 atatacatgtattctaacctacactttgcttatgtgtcacctcaccaattc 3744468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 5884481 - 5884423
Alignment:
Q  171 ttgcaaaaacacttcatttacttcacttcctgcaagttacacaataaaagcattataat 229  Q
    |||||||| |||| ||||||||||||||| ||||||||  ||||| || ||||||||||    
T  5884481 ttgcaaaagcactgcatttacttcacttcatgcaagttgtacaatgaatgcattataat 5884423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 54945835 - 54945777
Alignment:
Q  171 ttgcaaaaacacttcatttacttcacttcctgcaagttacacaataaaagcattataat 229  Q
    |||||||| |||| ||||||||||||||| ||||||||  ||||| || ||||||||||    
T  54945835 ttgcaaaagcactgcatttacttcacttcatgcaagttgtacaatgaatgcattataat 54945777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 26297728 - 26297680
Alignment:
Q  19 tatacatgcattctaaactacattttgcctatgtgtcaccttaccaatt 67  Q
    |||||||| ||||||||||||| ||||| ||||||| |||| |||||||    
T  26297728 tatacatgtattctaaactacactttgcttatgtgttacctcaccaatt 26297680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 8e-70; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 22 - 274
Target Start/End: Complemental strand, 41646969 - 41646719
Alignment:
Q  22 acatgcattctaaactacattttgcctatgtgtcaccttaccaatt--ccacatttttaactaatctctcatacttatgtcatgtgactctctttttgtt 119  Q
    ||||| ||| ||| ||||||||| |||||||||||||||||||||   || | |||||||||||||||||||||||||| |||||| || |||||| |||    
T  41646969 acatgtattataagctacatttttcctatgtgtcaccttaccaatgtcccccctttttaactaatctctcatacttatgccatgtggctatctttt-gtt 41646871  T
Q  120 cttaattttttactagttattccttactatctatctttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagttacacaataaaa 219  Q
    ||| ||| ||||||||  ||||||||||   ||||||||||||| ||||||||||||||||||| ||||||||||| ||| ||||||||||||||| ||     
T  41646870 cttgattctttactagccattccttact---tatctttcattttccatcggttgcaaaaacactccatttacttcatttcatgcaagttacacaatgaat 41646774  T
Q  220 gcattataatccattttattaatattgaggggttacattttaaaattattcatat 274  Q
    | ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41646773 gtattttaatccattttattaatattgaggggttacattttaaaattattcatat 41646719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 143 - 274
Target Start/End: Complemental strand, 7574233 - 7574102
Alignment:
Q  143 ttactatctatctttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagttacacaataaaagcattataatccattttattaat 242  Q
    ||||||||||||||||||||| |||| ||| ||||||| || ||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||    
T  7574233 ttactatctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 7574134  T
Q  243 attgaggggttacattttaaaattattcatat 274  Q
    ||||||||||||||||||||||||||||||||    
T  7574133 attgaggggttacattttaaaattattcatat 7574102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 143 - 274
Target Start/End: Complemental strand, 16668828 - 16668697
Alignment:
Q  143 ttactatctatctttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagttacacaataaaagcattataatccattttattaat 242  Q
    ||||||||||||||||||||| |||| ||| ||||||| || ||||||||||||||| ||||||||||| ||| || |||||||||||||||||||||||    
T  16668828 ttactatctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacataatgaatgcattataatccattttattaat 16668729  T
Q  243 attgaggggttacattttaaaattattcatat 274  Q
    ||||||||||||||||||||||||||||||||    
T  16668728 attgaggggttacattttaaaattattcatat 16668697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 43564238 - 43564290
Alignment:
Q  222 attataatccattttattaatattgaggggttacattttaaaattattcatat 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43564238 attataatccattttattaatattgaggggttacattttaaaattattcatat 43564290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 29455448 - 29455500
Alignment:
Q  222 attataatccattttattaatattgaggggttacattttaaaattattcatat 274  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29455448 attataatccattttattaatatcgaggggttacattttaaaattattcatat 29455500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 37904142 - 37904094
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaat 66  Q
    ||||||||| ||||||| ||||||||| |||||||||||||| ||||||    
T  37904142 atatacatgtattctaagctacatttttcctatgtgtcacctcaccaat 37904094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 7574399 - 7574352
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaa 65  Q
    ||||||||| ||||||| ||||||||| |||||||||||||| |||||    
T  7574399 atatacatgtattctaacctacatttttcctatgtgtcacctcaccaa 7574352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 16668982 - 16668935
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaa 65  Q
    ||||||||| ||||||| ||||||||| |||||||||||||| |||||    
T  16668982 atatacatgtattctaacctacatttttcctatgtgtcacctcaccaa 16668935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 22990076 - 22990025
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaattcc 69  Q
    ||||||||| |||||||  |||||||||| |||||||||||| |||||||||    
T  22990076 atatacatgtattctaacgtacattttgcttatgtgtcacctcaccaattcc 22990025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 6414398 - 6414358
Alignment:
Q  19 tatacatgcattctaaactacattttgcctatgtgtcacct 59  Q
    |||||||| ||||||||||||| ||||| ||||||||||||    
T  6414398 tatacatgtattctaaactacactttgcttatgtgtcacct 6414358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 77 - 274
Target Start/End: Original strand, 3182 - 3378
Alignment:
Q  77 taactaatctctcatacttatgtcatgtgactctctttttgttcttaattttttactagttattccttactatctatctttcatttttcatcggttgcaa 176  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||| ||| ||||||||  |||| ||||||| ||||||||||||  |||| |||||||    
T  3182 taactaatctctcatacttatgtcatgtggctctctttt-gttcttgattctttactagccattctttactatttatctttcatttcccatcagttgcaa 3280  T
Q  177 aaacacttcatttacttcacttcctgcaagttacacaataaaagcattataatccattttattaatattgaggggttacattttaaaattattcatat 274  Q
    ||||||||||||||||||||||| |||||||| |||||| |  | |||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  3281 aaacacttcatttacttcacttcatgcaagttgcacaatgattgaattataatccattttattaatattaagcggttacattttaaaattattcatat 3378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 77 - 274
Target Start/End: Complemental strand, 23726231 - 23726036
Alignment:
Q  77 taactaatctctcatacttatgtcatgtgactctctttttgttcttaattttttactagttattccttactatctatctttcatttttcatcggttgcaa 176  Q
    ||||||||||||||||||||||| || || ||||||||| |||||| ||| |||||| || |||| |||||||||||||||||||||||||| |||||||    
T  23726231 taactaatctctcatacttatgttatatggctctctttt-gttcttgattctttactggtcattctttactatctatctttcatttttcatctgttgcaa 23726133  T
Q  177 aaacacttcatttacttcacttcctgcaagttacacaataaaagcattataatccattttattaatattgaggggttacattttaaaattattcatat 274  Q
    ||||||||||||||||||| ||| |||||||| |||||| || | |||||||||||||||||||||||| |  ||||||||||| |||||||||||||    
T  23726132 aaacacttcatttacttcatttcatgcaagttgcacaatgaatgaattataatccattttattaatattaaacggttacatttt-aaattattcatat 23726036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 143 - 274
Target Start/End: Original strand, 13786229 - 13786360
Alignment:
Q  143 ttactatctatctttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagttacacaataaaagcattataatccattttattaat 242  Q
    ||||||||||||||||||||| |||| ||| ||||||| || ||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||    
T  13786229 ttactatctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 13786328  T
Q  243 attgaggggttacattttaaaattattcatat 274  Q
    ||||||||||||||||||||||||||||||||    
T  13786329 attgaggggttacattttaaaattattcatat 13786360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 77 - 274
Target Start/End: Complemental strand, 22912735 - 22912539
Alignment:
Q  77 taactaatctctcatacttatgtcatgtgactctctttttgttcttaattttttactagttattccttactatctatctttcatttttcatc-ggttgca 175  Q
    |||||||||||||||||||||| |||||| ||||||||| |||||| ||| ||||||||  |||||||| ||| ||||||||||||  |||| |||||||    
T  22912735 taactaatctctcatacttatgccatgtggctctctttt-gttcttgattctttactagccattccttattatttatctttcatttcccatcaggttgca 22912637  T
Q  176 aaaacacttcatttacttcacttcctgcaagttacacaataaaagcattataatccattttattaatattgaggggttacattttaaaattattcatat 274  Q
     ||||||| ||||||||||||||| |||| |||||| ||| || ||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||    
T  22912636 gaaacactccatttacttcacttcttgcatgttacaaaatgaatgcattataaaccattttattaata-tgaggagttacattttaaaattattcatat 22912539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 143 - 274
Target Start/End: Complemental strand, 25807914 - 25807783
Alignment:
Q  143 ttactatctatctttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagttacacaataaaagcattataatccattttattaat 242  Q
    ||||||||||||||||||||| ||||  || |||||||  | ||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||    
T  25807914 ttactatctatctttcattttccatcaattacaaaaactttccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 25807815  T
Q  243 attgaggggttacattttaaaattattcatat 274  Q
    ||||||||||||||||||||||||||||||||    
T  25807814 attgaggggttacattttaaaattattcatat 25807783  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 39621648 - 39621699
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaattcc 69  Q
    ||||||||| ||||||||||||| ||||| |||||||||||| |||||||||    
T  39621648 atatacatgtattctaaactacactttgcttatgtgtcacctcaccaattcc 39621699  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 13786063 - 13786110
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaa 65  Q
    ||||||||| ||||||| ||||||||| |||||||||||||| |||||    
T  13786063 atatacatgtattctaacctacatttttcctatgtgtcacctcaccaa 13786110  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 25808080 - 25808033
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaa 65  Q
    ||||||||| ||||||| ||||||||| |||||||||||||| |||||    
T  25808080 atatacatgtattctaacctacatttttcctatgtgtcacctcaccaa 25808033  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 29679051 - 29679092
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcacct 59  Q
    ||||||||| ||||||||||||| ||||| ||||||||||||    
T  29679051 atatacatgtattctaaactacactttgcttatgtgtcacct 29679092  T

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Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 143 - 274
Target Start/End: Complemental strand, 13433595 - 13433464
Alignment:
Q  143 ttactatctatctttcatttttcatcggttgcaaaaacacttcatttacttcacttcctgcaagttacacaataaaagcattataatccattttattaat 242  Q
    ||||||||||||||||||||| |||| ||| ||||||| || ||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||    
T  13433595 ttactatctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 13433496  T
Q  243 attgaggggttacattttaaaattattcatat 274  Q
    ||||||||||||||||||||||||||||||||    
T  13433495 attgaggggttacattttaaaattattcatat 13433464  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 18877366 - 18877414
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaat 66  Q
    ||||||||| ||||||| ||||||||||| || ||||||||||||||||    
T  18877366 atatacatgtattctaacctacattttgcttaggtgtcaccttaccaat 18877414  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 13433761 - 13433714
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaa 65  Q
    ||||||||| ||||||| ||||||||| |||||||||||||| |||||    
T  13433761 atatacatgtattctaacctacatttttcctatgtgtcacctcaccaa 13433714  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 274
Target Start/End: Complemental strand, 16712155 - 16712120
Alignment:
Q  239 taatattgaggggttacattttaaaattattcatat 274  Q
    ||||| ||||||||||||||||||||||||||||||    
T  16712155 taatagtgaggggttacattttaaaattattcatat 16712120  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 16857232 - 16857290
Alignment:
Q  171 ttgcaaaaacacttcatttacttcacttcctgcaagttacacaataaaagcattataat 229  Q
    |||||||| |||| ||||||||||||||| ||||||||  ||||| || ||||||||||    
T  16857232 ttgcaaaagcactgcatttacttcacttcatgcaagttgtacaatgaatgcattataat 16857290  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Complemental strand, 26615380 - 26615346
Alignment:
Q  171 ttgcaaaaacacttcatttacttcacttcctgcaa 205  Q
    ||||||||||||||||||||||||||||| |||||    
T  26615380 ttgcaaaaacacttcatttacttcacttcatgcaa 26615346  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Complemental strand, 26721308 - 26721274
Alignment:
Q  171 ttgcaaaaacacttcatttacttcacttcctgcaa 205  Q
    ||||||||||||||||||||||||||||| |||||    
T  26721308 ttgcaaaaacacttcatttacttcacttcatgcaa 26721274  T

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Target: scaffold0316 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 5542 - 5494
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcaccttaccaat 66  Q
    ||||||||| ||||||| ||||||||| |||||||||||||||||||||    
T  5542 atatacatgtattctaacctacatttttcctatgtgtcaccttaccaat 5494  T

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Target: scaffold0045 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 1417 - 1376
Alignment:
Q  18 atatacatgcattctaaactacattttgcctatgtgtcacct 59  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||    
T  1417 atatacatgtattctaacctacattttgcctatgtgtaacct 1376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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