View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_low_39 (Length: 278)
Name: NF19297_low_39
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 85 - 261
Target Start/End: Complemental strand, 15819441 - 15819265
Alignment:
| Q |
85 |
aatcgtatcatttcacttctggaaatcttgaatcaatacaaacctttgcctataaggtttttattcgattcaatcttcattctgaaattgctctttccat |
184 |
Q |
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| T |
15819441 |
aatcgtatcatttcacttctgaaaactttgaatcaattcaaacctttgcctataaggtttttattcgattcaatcttcattctgaaattgctctttcgat |
15819342 |
T |
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| Q |
185 |
tctactcaatcttcatgtcaaccaaagttctattttttgcactattgaatttattcaagcattcattgatttgattc |
261 |
Q |
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| T |
15819341 |
tctactcaatcttcatgtcaaccaaagttctattttttgcactattgaatttattcaatcattcattgatttgattc |
15819265 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 17060798 - 17060888
Alignment:
| Q |
83 |
tgaatcgtatcatttcacttctggaaatcttgaatcaatacaaacctttgcctataaggtttttattcgattcaatcttcattctgaaatt |
173 |
Q |
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| T |
17060798 |
tgaatcgtatcatttcactcctagaatccttgaatcgattcaaacctttgcttataaggttatgatctgattcaatcttaattctaaaatt |
17060888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 17060920 - 17060966
Alignment:
| Q |
188 |
actcaatcttcatgtcaaccaaagttctattttttgcactattgaat |
234 |
Q |
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| T |
17060920 |
actcaatcttcatgtcaacccaagttgtactttttgcactattgaat |
17060966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 261
Target Start/End: Original strand, 15447554 - 15447625
Alignment:
| Q |
190 |
tcaatcttcatgtcaaccaaagttctattttttgcactattgaatttattcaagcattcattgatttgattc |
261 |
Q |
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| T |
15447554 |
tcaatcttcatgtcaacccaacatctttattttgcactattgaatcgattcaagcttttcttgatttgattc |
15447625 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 12272265 - 12272346
Alignment:
| Q |
83 |
tgaatcgtatcatttcacttctggaaatcttgaatcaatacaaacctttgcctataaggtttttattcgattcaatcttcat |
164 |
Q |
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||||| |||| ||||||||| |||||| |||||||| || |||| ||||| |||| |||||| |||||| ||||||||||| |
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| T |
12272265 |
tgaatagtatgatttcacttttggaaaccttgaatcgattcaaaactttggatatatggttttgattcgactcaatcttcat |
12272346 |
T |
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