View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19297_low_4 (Length: 501)

Name: NF19297_low_4
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19297_low_4
NF19297_low_4
[»] chr6 (6 HSPs)
chr6 (35-290)||(17589-17846)
chr6 (35-290)||(9828-10085)
chr6 (35-258)||(12554-12778)
chr6 (407-492)||(10198-10283)
chr6 (407-492)||(17959-18044)
chr6 (35-82)||(30641562-30641608)
[»] chr3 (13 HSPs)
chr3 (35-220)||(2544961-2545150)
chr3 (107-220)||(35127173-35127287)
chr3 (111-220)||(36429987-36430097)
chr3 (100-211)||(46278512-46278623)
chr3 (107-221)||(27221384-27221507)
chr3 (35-95)||(46278650-46278709)
chr3 (35-82)||(27221502-27221549)
chr3 (35-82)||(35127131-35127178)
chr3 (172-211)||(9291862-9291901)
chr3 (35-69)||(37921915-37921949)
chr3 (458-487)||(21666455-21666484)
chr3 (458-487)||(54710975-54711004)
chr3 (35-63)||(36430092-36430120)
[»] chr1 (5 HSPs)
chr1 (35-221)||(32060440-32060628)
chr1 (35-220)||(35754008-35754206)
chr1 (99-181)||(23552456-23552538)
chr1 (111-221)||(8081885-8081991)
chr1 (35-63)||(8081986-8082014)
[»] chr8 (10 HSPs)
chr8 (55-220)||(30735875-30736043)
chr8 (107-221)||(29668732-29668848)
chr8 (107-217)||(7839993-7840104)
chr8 (100-220)||(11676253-11676374)
chr8 (35-82)||(29668843-29668890)
chr8 (100-172)||(11668019-11668091)
chr8 (35-95)||(11668159-11668218)
chr8 (35-95)||(11676421-11676480)
chr8 (35-82)||(7839952-7839998)
chr8 (35-82)||(990210-990256)
[»] chr4 (8 HSPs)
chr4 (107-221)||(50063730-50063845)
chr4 (107-220)||(28071412-28071526)
chr4 (35-82)||(50063840-50063887)
chr4 (169-221)||(25516846-25516899)
chr4 (169-221)||(25536719-25536772)
chr4 (35-82)||(28071371-28071417)
chr4 (125-182)||(25155102-25155159)
chr4 (35-63)||(2035382-2035410)
[»] chr5 (6 HSPs)
chr5 (111-221)||(2643631-2643742)
chr5 (115-221)||(2315886-2315993)
chr5 (102-220)||(11015984-11016103)
chr5 (220-290)||(43584056-43584126)
chr5 (134-220)||(29836536-29836623)
chr5 (55-95)||(11016126-11016165)


Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 35 - 290
Target Start/End: Original strand, 17589 - 17846
Alignment:
Q  35 aatatgagattcgattccttttctcctgttcaaaatttctgaattttcaagtctgcaacggcctcaacggcgattttcctgtgattcttgttctcggcgt 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  17589 aatatgagattcgattccttttctcctgttcaaaatttctgaattttcaagtctgcaacggccgcaacggcgattttcctgtgatttttgttctcggcgt 17688  T
Q  135 gaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc-ttttttgaaaccttggcagccgtccact 233  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17689 gaaaaggtccaaaaacggtcaaggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcctttttttgaaaccttggcagccgtccact 17788  T
Q  234 tggttggccaccgtctaactgctcgcgccggccg-ttttcttctaaatcaacaggtga 290  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17789 tggttggccaccgtctaactgctcgcgccggccgtttttcttctaaatcaacaggtga 17846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 35 - 290
Target Start/End: Original strand, 9828 - 10085
Alignment:
Q  35 aatatgagattcgattccttttctcctgttcaaaatttctgaattttcaagtctgcaacggcctcaacggcgattttcctgtgattcttgttctcggcgt 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  9828 aatatgagattcgattccttttctcctgttcaaaatttctgaattttcaagtctgcaacggccgcaacggcgattttcctgtgatttttgttctcggcgt 9927  T
Q  135 gaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc-ttttttgaaaccttggcagccgtccact 233  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9928 gaaaaggtccaaaaacggtaaaggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcctttttttgaaaccttggcagccgtccact 10027  T
Q  234 tggttggccaccgtctaactgctcgcgccggccg-ttttcttctaaatcaacaggtga 290  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10028 tggttggccaccgtctaactgctcgcgccggccgtttttcttctaaatcaacaggtga 10085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 35 - 258
Target Start/End: Original strand, 12554 - 12778
Alignment:
Q  35 aatatgagattcgattccttttctcctgttcaaaatttctgaattttcaagtctgcaacggcctcaacggcgattttcctgtgattcttgttctcggcgt 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  12554 aatatgagattcgattccttttctcctgttcaaaatttctgaattttcaagtctgcaacggccgcaacggcgattttcctgtgatttttgttctcggcgt 12653  T
Q  135 gaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc-ttttttgaaaccttggcagccgtccact 233  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12654 gaaaaggtccaaaaacggtcaaggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcctttttttgaaaccttggcagccgtccact 12753  T
Q  234 tggttggccaccgtctaactgctcg 258  Q
    |||||||||||||||||||||||||    
T  12754 tggttggccaccgtctaactgctcg 12778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 407 - 492
Target Start/End: Original strand, 10198 - 10283
Alignment:
Q  407 catgtatgtttcatcttcgtcatcataattcaatatgggtaaatgcttttatctttcttttggtgattgctctctaggtgtctgtg 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10198 catgtatgtttcatcttcgtcatcataattcaatatgggtaaatgcttttatctttcttttggtgattgctctctaggtgtttgtg 10283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 407 - 492
Target Start/End: Original strand, 17959 - 18044
Alignment:
Q  407 catgtatgtttcatcttcgtcatcataattcaatatgggtaaatgcttttatctttcttttggtgattgctctctaggtgtctgtg 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17959 catgtatgtttcatcttcgtcatcataattcaatatgggtaaatgcttttatctttcttttggtgattgctctctaggtgtttgtg 18044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 30641562 - 30641608
Alignment:
Q  35 aatatgagattcgattccttttctcctgttcaaaatttctgaattttc 82  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30641562 aatatgagattcgattccttttctcctgttc-aaatttctgaattttc 30641608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 148; Significance: 7e-78; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 35 - 220
Target Start/End: Complemental strand, 2545150 - 2544961
Alignment:
Q  35 aatatgagattcgattccttttctcctgttcaaaatttctgaattttcaagtctgcaacggcctc---aacggcgattttcctgtgattcttgttctcgg 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||   | ||||||||||||||||||| ||||||||||    
T  2545150 aatatgagattcgattccttttctcctgttcaaaatttctgaattttcaagtctgtaacggagtccgtagcggcgattttcctgtgatttttgttctcgg 2545051  T
Q  132 cgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcctt-ttttgaaaccttg 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2545050 cgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcctttttttgaaaccttg 2544961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 107 - 220
Target Start/End: Original strand, 35127173 - 35127287
Alignment:
Q  107 attttcctgtgattcttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc- 205  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  35127173 attttcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcct 35127272  T
Q  206 ttttttgaaaccttg 220  Q
    |||||||||||||||    
T  35127273 ttttttgaaaccttg 35127287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 36430097 - 36429987
Alignment:
Q  111 tcctgtgattcttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcctt-tt 209  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  36430097 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccttttt 36429998  T
Q  210 ttgaaaccttg 220  Q
    |||||||||||    
T  36429997 ttgaaaccttg 36429987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 46278623 - 46278512
Alignment:
Q  100 aacggcgattttcctgtgattcttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtac 199  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  46278623 aacggcgattttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcacgttggctgctgataccgttttgtaacggccgcaatcccggtac 46278524  T
Q  200 cggtcctttttt 211  Q
    |||||| |||||    
T  46278523 cggtccgttttt 46278512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 107 - 221
Target Start/End: Complemental strand, 27221507 - 27221384
Alignment:
Q  107 attttcctgtgattcttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctg----ataccgttttgtaacggccgca----atcccggta 198  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||    |||||||||    
T  27221507 attttcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgtactgtaccgttttgtaacggccgcaatccatcccggta 27221408  T
Q  199 ccggtcc-ttttttgaaaccttgg 221  Q
    ||||||| ||||||||||||||||    
T  27221407 ccggtcctttttttgaaaccttgg 27221384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 46278709 - 46278650
Alignment:
Q  35 aatatgagattcgattccttttctcctgttcaaaatttctgaattttcaagtctgcaacgg 95  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  46278709 aatatgagattcgattccttttctcctgttc-aaatttctgaattttcaagtctgtaacgg 46278650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 27221549 - 27221502
Alignment:
Q  35 aatatgagattcgattccttttctcctgttcaaaatttctgaattttc 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27221549 aatatgagattcgattccttttctcctgttcaaaatttctgaattttc 27221502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 35127131 - 35127178
Alignment:
Q  35 aatatgagattcgattccttttctcctgttcaaaatttctgaattttc 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35127131 aatatgagattcgattccttttctcctgttcaaaatttctgaattttc 35127178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 9291901 - 9291862
Alignment:
Q  172 cgttttgtaacggccgcaatcccggtaccggtcctttttt 211  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  9291901 cgttttgtaacggccgcaatcccggtaccggtccgttttt 9291862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 37921915 - 37921949
Alignment:
Q  35 aatatgagattcgattccttttctcctgttcaaaa 69  Q
    |||||||||||||||||||||||||||||||||||    
T  37921915 aatatgagattcgattccttttctcctgttcaaaa 37921949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 487
Target Start/End: Complemental strand, 21666484 - 21666455
Alignment:
Q  458 tctttcttttggtgattgctctctaggtgt 487  Q
    ||||||||||||||||||||||||||||||    
T  21666484 tctttcttttggtgattgctctctaggtgt 21666455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 487
Target Start/End: Complemental strand, 54711004 - 54710975
Alignment:
Q  458 tctttcttttggtgattgctctctaggtgt 487  Q
    ||||||||||||||||||||||||||||||    
T  54711004 tctttcttttggtgattgctctctaggtgt 54710975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 36430120 - 36430092
Alignment:
Q  35 aatatgagattcgattccttttctcctgt 63  Q
    |||||||||||||||||||||||||||||    
T  36430120 aatatgagattcgattccttttctcctgt 36430092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 35 - 221
Target Start/End: Original strand, 32060440 - 32060628
Alignment:
Q  35 aatatgagattcgattccttttctcctgttcaaaatttctgaattttcaagtctgcaacggcctc---aacggcgattttcctgtgattcttgttctcgg 131  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||  ||   ||||||||||| ||||||||| ||||||||||    
T  32060440 aatatgagattcgattccttttctcctgttcaaa-tttctgaattttcaagtctgtaacggagtccgtaacggcgattt-cctgtgatttttgttctcgg 32060537  T
Q  132 cgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc-ttttttgaaaccttgg 221  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  32060538 cgtgaaaagatccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggcaccggtcctttttttgaaaccttgg 32060628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 35 - 220
Target Start/End: Complemental strand, 35754206 - 35754008
Alignment:
Q  35 aatatgagattcgattccttttctcctgttcaaaatttctgaattttcaagtctgcaacggcct-------------caacggcgattttcctgtgattc 121  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||| |             ||||||||||||||||||||||     
T  35754206 aatatgagattcgattccttttcttctgttcaaa-tttctgaattttcaagtctgtaacggcgttccgtaacggccgcaacggcgattttcctgtgattt 35754108  T
Q  122 ttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcctt-ttttgaaaccttg 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  35754107 ttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtacgggtcctttttttgaaaccttg 35754008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 99 - 181
Target Start/End: Original strand, 23552456 - 23552538
Alignment:
Q  99 caacggcgattttcctgtgattcttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaa 181  Q
    |||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23552456 caacggggattttcctgtgatttttgttctcggcttgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaa 23552538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 8081991 - 8081885
Alignment:
Q  111 tcctgtgattcttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc--ttt 208  Q
    |||||||||| ||||||||||| |||||||||||||||||| ||||||||||||      ||||||||||||||||| |||||||||||||||||  |||    
T  8081991 tcctgtgatttttgttctcggcatgaaaaggtccaaaaacgctcacggtggctg------ccgttttgtaacggccgtaatcccggtaccggtccttttt 8081898  T
Q  209 tttgaaaccttgg 221  Q
    |||||||||||||    
T  8081897 tttgaaaccttgg 8081885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 8082014 - 8081986
Alignment:
Q  35 aatatgagattcgattccttttctcctgt 63  Q
    |||||||||||||||||||||||||||||    
T  8082014 aatatgagattcgattccttttctcctgt 8081986  T

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Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 55 - 220
Target Start/End: Original strand, 30735875 - 30736043
Alignment:
Q  55 ttctcctgttcaaaatttctgaattttcaagtctgcaacggcctc---aacggcgattttcctgtgattcttgttctcggcgtgaaaaggtccaaaaacg 151  Q
    |||||||||||||| |||||||||||||||||||| ||| |  ||   | || |||||||||||||||| ||||||||| ||||||||||||||||||||    
T  30735875 ttctcctgttcaaa-tttctgaattttcaagtctgtaactgagtccgtaccgtcgattttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacg 30735973  T
Q  152 gtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc-ttttttgaaaccttg 220  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||    
T  30735974 gtcacggtggctgctgataccgttttgtaacggcctcaatcccggcaccggtccgttttttgaaaccttg 30736043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 107 - 221
Target Start/End: Complemental strand, 29668848 - 29668732
Alignment:
Q  107 attttcctgtgattcttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcct 206  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29668848 attttcctgtgatttttgttctcggcgtgaaaaggtcgaaaaacggtcacggtggctgctgataccgttttgtaacggccacaatcccggtaccggtcct 29668749  T
Q  207 --tttttgaaaccttgg 221  Q
      |||||||||||||||    
T  29668748 tatttttgaaaccttgg 29668732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 107 - 217
Target Start/End: Original strand, 7839993 - 7840104
Alignment:
Q  107 attttcctgtgattcttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc- 205  Q
    |||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7839993 attttcctgtgatttttgttctcgacctgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccg 7840092  T
Q  206 ttttttgaaacc 217  Q
    ||||||||||||    
T  7840093 ttttttgaaacc 7840104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 100 - 220
Target Start/End: Complemental strand, 11676374 - 11676253
Alignment:
Q  100 aacggcgattttcctgtgattcttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtac 199  Q
    |||||||||||| |||||||| ||||||||  |||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  11676374 aacggcgattttgctgtgatttttgttctcaacgtgaaaaggaccaaaaacggtcacggtggctgccgataccgatttgtaacggccgcaatcccggtac 11676275  T
Q  200 cggtc-cttttttgaaaccttg 220  Q
    |||||  |||||||||||||||    
T  11676274 cggtctgttttttgaaaccttg 11676253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 29668890 - 29668843
Alignment:
Q  35 aatatgagattcgattccttttctcctgttcaaaatttctgaattttc 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29668890 aatatgagattcgattccttttctcctgttcaaaatttctgaattttc 29668843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 11668091 - 11668019
Alignment:
Q  100 aacggcgattttcctgtgattcttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgatacc 172  Q
    |||||||||||| ||||| || ||||||||  |||||||||| ||||||||||||||||||||||| ||||||    
T  11668091 aacggcgattttgctgtggtttttgttctcaacgtgaaaaggaccaaaaacggtcacggtggctgccgatacc 11668019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 11668218 - 11668159
Alignment:
Q  35 aatatgagattcgattccttttctcctgttcaaaatttctgaattttcaagtctgcaacgg 95  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  11668218 aatatgagattcgattccttttctcctgttc-aaattactgaattttcaagtctgtaacgg 11668159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 11676480 - 11676421
Alignment:
Q  35 aatatgagattcgattccttttctcctgttcaaaatttctgaattttcaagtctgcaacgg 95  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  11676480 aatatgagattcgattccttttctcctgttc-aaattactgaattttcaagtctgtaacgg 11676421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 7839952 - 7839998
Alignment:
Q  35 aatatgagattcgattccttttctcctgttcaaaatttctgaattttc 82  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  7839952 aatatgagattcgtttccttttctcctgttc-aaatttctgaattttc 7839998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 990210 - 990256
Alignment:
Q  35 aatatgagattcgattccttttctcctgttcaaaatttctgaattttc 82  Q
    |||||||||||||||| ||||||||||||| ||||||| |||||||||    
T  990210 aatatgagattcgatttcttttctcctgtt-aaaatttatgaattttc 990256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 107 - 221
Target Start/End: Complemental strand, 50063845 - 50063730
Alignment:
Q  107 attttcctgtgattcttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcct 206  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50063845 attttcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtgacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcct 50063746  T
Q  207 t-ttttgaaaccttgg 221  Q
    | ||||||||||||||    
T  50063745 ttttttgaaaccttgg 50063730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 107 - 220
Target Start/End: Original strand, 28071412 - 28071526
Alignment:
Q  107 attttcctgtgattcttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc- 205  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  28071412 attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccg 28071511  T
Q  206 ttttttgaaaccttg 220  Q
    |||||||||||||||    
T  28071512 ttttttgaaaccttg 28071526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 50063887 - 50063840
Alignment:
Q  35 aatatgagattcgattccttttctcctgttcaaaatttctgaattttc 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50063887 aatatgagattcgattccttttctcctgttcaaaatttctgaattttc 50063840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 25516846 - 25516899
Alignment:
Q  169 taccgttttgtaacggccgcaatcccggtaccggtcctttttt-gaaaccttgg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25516846 taccgttttgtaacggccgcaatcccggtaccggtccttttttcgaaaccttgg 25516899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 25536772 - 25536719
Alignment:
Q  169 taccgttttgtaacggccgcaatcccggtaccggtcctt-ttttgaaaccttgg 221  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25536772 taccgttttgtaacggccgcaatcccggtaccggtcctttttttgaaaccttgg 25536719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 28071371 - 28071417
Alignment:
Q  35 aatatgagattcgattccttttctcctgttcaaaatttctgaattttc 82  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28071371 aatatgagattcgattccttttctcctgttc-aaatttctgaattttc 28071417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 25155159 - 25155102
Alignment:
Q  125 ttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaac 182  Q
    ||||| |||||||||||| |||||||||| || |||||||| | ||||||||||||||    
T  25155159 ttctcagcgtgaaaaggtacaaaaacggtaacagtggctgccgttaccgttttgtaac 25155102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 2035382 - 2035410
Alignment:
Q  35 aatatgagattcgattccttttctcctgt 63  Q
    |||||||||||||||||||||||||||||    
T  2035382 aatatgagattcgattccttttctcctgt 2035410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 7e-47; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 111 - 221
Target Start/End: Original strand, 2643631 - 2643742
Alignment:
Q  111 tcctgtgattcttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc-tttt 209  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2643631 tcctgtgatttttgttctcggcgtgaaaaggtacaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccttttt 2643730  T
Q  210 ttgaaaccttgg 221  Q
    ||||||||||||    
T  2643731 ttgaaaccttgg 2643742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 2315886 - 2315993
Alignment:
Q  115 gtgattcttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcct-tttttga 213  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2315886 gtgatttttgttctcggcgtgaaaaggtccaaaaacgatcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcctgtttttga 2315985  T
Q  214 aaccttgg 221  Q
    ||||||||    
T  2315986 aaccttgg 2315993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 102 - 220
Target Start/End: Complemental strand, 11016103 - 11015984
Alignment:
Q  102 cggcgattttcctgtgattcttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccg 201  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||    
T  11016103 cggcgattttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcacggtggccgctgataccgttttgtaacgtccgcaattccggtaccg 11016004  T
Q  202 gtcc-ttttttgaaaccttg 220  Q
    |||| |||||||||||||||    
T  11016003 gtccgttttttgaaaccttg 11015984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 43584056 - 43584126
Alignment:
Q  220 ggcagccgtccacttggttggccaccgtctaactgctcgcgccggccgttttcttctaaatcaacaggtga 290  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||| ||||||    
T  43584056 ggcaaccgtccacttggttggccaccgtctaactgctcgcgccgaccgtattcttctaactcaagaggtga 43584126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 134 - 220
Target Start/End: Complemental strand, 29836623 - 29836536
Alignment:
Q  134 tgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc-ttttttgaaaccttg 220  Q
    ||||||||| |||||||||| ||||| |||||  ||||| |||||||||| ||| |||||||||||  |||| |||||| ||||||||    
T  29836623 tgaaaaggtgcaaaaacggtaacggtagctgcctataccattttgtaacgtccgaaatcccggtacatgtccgttttttaaaaccttg 29836536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 11016165 - 11016126
Alignment:
Q  55 ttctcctgttcaaaatttctgaattttcaagtctgcaacgg 95  Q
    |||||||||||||| |||||||||||||||||||| |||||    
T  11016165 ttctcctgttcaaa-tttctgaattttcaagtctgtaacgg 11016126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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