View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19297_low_40 (Length: 272)

Name: NF19297_low_40
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19297_low_40
NF19297_low_40
[»] chr4 (3 HSPs)
chr4 (19-264)||(2060830-2061075)
chr4 (178-237)||(55766212-55766271)
chr4 (178-237)||(55830467-55830526)
[»] chr7 (4 HSPs)
chr7 (110-238)||(46374219-46374350)
chr7 (147-239)||(3960430-3960522)
chr7 (151-239)||(5227165-5227253)
chr7 (178-239)||(47273253-47273314)
[»] chr1 (5 HSPs)
chr1 (165-239)||(36185430-36185504)
chr1 (147-219)||(9966061-9966133)
chr1 (166-264)||(10846901-10847000)
chr1 (147-247)||(33195664-33195765)
chr1 (179-239)||(29315195-29315255)
[»] chr8 (4 HSPs)
chr8 (171-240)||(41123882-41123951)
chr8 (165-239)||(39141288-39141362)
chr8 (173-264)||(34700188-34700280)
chr8 (110-225)||(33075594-33075712)
[»] chr3 (6 HSPs)
chr3 (165-239)||(22138108-22138182)
chr3 (165-264)||(32876598-32876698)
chr3 (177-264)||(47297775-47297863)
chr3 (147-219)||(4302455-4302527)
chr3 (165-239)||(18942322-18942396)
chr3 (165-219)||(29399091-29399145)
[»] chr6 (2 HSPs)
chr6 (128-232)||(1189822-1189929)
chr6 (165-219)||(6103716-6103770)
[»] chr2 (1 HSPs)
chr2 (129-225)||(33406229-33406327)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 2060830 - 2061075
Alignment:
Q  19 cttaagtctagcctaattcaaaaaacataagtctaggtttggtctattaaccatcataggctcattcttaaagtctggtctatcatttataaaaggtttg 118  Q
    ||||||||||||||| || ||||||||||||||| |||||| |||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||    
T  2060830 cttaagtctagcctacttgaaaaaacataagtctgggtttgatctattaaccatcataggctcattgttaaggtctgatctatcatttataaaaggtttg 2060929  T
Q  119 gtgaagtccgaaaacctatttaaaagcctttacactaaggttaagtaacacatataagtctactactaaatatgccaaaatttatgaagatctaaagcac 218  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||| ||||||||     
T  2060930 gtgaagtctgaaaacctatttaaaaacctttacactaaggttaagtaacacatataagtctgctactaaataggccaaaacttatgaagacctaaagcat 2061029  T
Q  219 acaaatatatctgctactaaaaacaaaattttatgaaagtataatc 264  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||    
T  2061030 acaaatatatctgctactaaaaacgaaattttatgaaagtctaatc 2061075  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 55766271 - 55766212
Alignment:
Q  178 ctactactaaatatgccaaaatttatgaagatctaaagcacacaaatatatctgctacta 237  Q
    |||||||||||||  |||||| |||| |||  ||||||||||||||||||| ||||||||    
T  55766271 ctactactaaataacccaaaacttataaaggactaaagcacacaaatatatttgctacta 55766212  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 55830526 - 55830467
Alignment:
Q  178 ctactactaaatatgccaaaatttatgaagatctaaagcacacaaatatatctgctacta 237  Q
    |||||||||||||  |||||| |||| |||  ||||||||||||||||||| ||||||||    
T  55830526 ctactactaaataacccaaaacttataaaggactaaagcacacaaatatatttgctacta 55830467  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 238
Target Start/End: Original strand, 46374219 - 46374350
Alignment:
Q  110 aaaggtttggtgaagtccgaaaacctatttaaaagcct---ttacactaaggttaagtaacacatataagtctactactaaatatgccaaaatttatgaa 206  Q
    |||||| || ||||||| |||| |||||||| ||||||   |||||||||||   |  ||||||| |||| ||| ||||||||| ||||||| |||||||    
T  46374219 aaaggtctgatgaagtctgaaagcctatttagaagcctattttacactaaggcctaacaacacatgtaagcctaatactaaataggccaaaacttatgaa 46374318  T
Q  207 gatctaaagcacacaaatatatctgctactaa 238  Q
    | |||||||||||||||||| | |||||||||    
T  46374319 ggtctaaagcacacaaatatgtttgctactaa 46374350  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 3960522 - 3960430
Alignment:
Q  147 tttacactaaggttaagtaacacatataagtctactactaaatatgccaaaatttatgaagatctaaagcacacaaatatatctgctactaaa 239  Q
    ||||||| |||||  || ||||||| ||| |||| ||||||||||| ||||| |||||||| || ||||||||| ||||  ||||||||||||    
T  3960522 tttacaccaaggtctagcaacacatgtaaatctattactaaatatgtcaaaacttatgaaggtcaaaagcacacgaataggtctgctactaaa 3960430  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 5227253 - 5227165
Alignment:
Q  151 cactaaggttaagtaacacatataagtctactactaaatatgccaaaatttatgaagatctaaagcacacaaatatatctgctactaaa 239  Q
    |||||||||| || ||||| || |||  |||||||||||| ||||||| ||||||||| ||||||||||| ||||  | ||||||||||    
T  5227253 cactaaggtttagcaacacctacaagcatactactaaataggccaaaacttatgaagacctaaagcacacgaataggtatgctactaaa 5227165  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 47273314 - 47273253
Alignment:
Q  178 ctactactaaatatgccaaaatttatgaagatctaaagcacacaaatatatctgctactaaa 239  Q
    ||||||||||| ||  ||||| ||||||| |||||||||| || |||| |||||||||||||    
T  47273314 ctactactaaacatatcaaaacttatgaatatctaaagcatacgaatagatctgctactaaa 47273253  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 36185504 - 36185430
Alignment:
Q  165 aacacatataagtctactactaaatatgccaaaatttatgaagatctaaagcacacaaatatatctgctactaaa 239  Q
    |||||||||||  ||||||||||| | |||||||||||||||||  |||||||||| |||| |||||||||||||    
T  36185504 aacacatataaacctactactaaacaagccaaaatttatgaagacttaaagcacacgaatagatctgctactaaa 36185430  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 9966133 - 9966061
Alignment:
Q  147 tttacactaaggttaagtaacacatataagtctactactaaatatgccaaaatttatgaagatctaaagcaca 219  Q
    ||||||||||| |  || ||||||| |||| ||||||||||||| | |||||||||||||| |||||||||||    
T  9966133 tttacactaagttctagcaacacatgtaagcctactactaaataggtcaaaatttatgaaggtctaaagcaca 9966061  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 264
Target Start/End: Complemental strand, 10847000 - 10846901
Alignment:
Q  166 acacatataagtctactactaaatatgccaaaatttatgaagatctaaagcacacaaatatatctgctactaaa-aacaaaattttatgaaagtataatc 264  Q
    |||||||||||||||||||||||||  |||||  |||| |||||||  | ||||| ||||  |||||||||||| ||| |||| ||||||| ||||||||    
T  10847000 acacatataagtctactactaaatagaccaaaccttattaagatctttaacacacgaataagtctgctactaaataacgaaatattatgaaggtataatc 10846901  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 33195664 - 33195765
Alignment:
Q  147 tttacactaaggttaagtaacacatataagtctactactaaatatgccaaaatttatgaagatctaaagcacacaaatatatctgctactaaa-aacaaa 245  Q
    |||||| ||||||  || ||||| |||||  |||||||||||||  |||||||||||||||   | |||||||||||||  | |||||||||| ||||||    
T  33195664 tttacattaaggtctagcaacacctataaacctactactaaatagaccaaaatttatgaaggcttgaagcacacaaataggtttgctactaaataacaaa 33195763  T
Q  246 at 247  Q
    ||    
T  33195764 at 33195765  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 29315255 - 29315195
Alignment:
Q  179 tactactaaatatgccaaaatttatgaagatctaaagcacacaaatatatctgctactaaa 239  Q
    |||||||||||| ||||||| ||||||| | ||||||||||| | ||  ||||||||||||    
T  29315255 tactactaaataggccaaaacttatgaaaacctaaagcacacgagtaagtctgctactaaa 29315195  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 240
Target Start/End: Complemental strand, 41123951 - 41123882
Alignment:
Q  171 tataagtctactactaaatatgccaaaatttatgaagatctaaagcacacaaatatatctgctactaaaa 240  Q
    |||||| ||||||||||||||||||||| ||||||||  ||||||||||||||||   ||||||||||||    
T  41123951 tataagcctactactaaatatgccaaaacttatgaaggcctaaagcacacaaataggcctgctactaaaa 41123882  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 39141362 - 39141288
Alignment:
Q  165 aacacatataagtctactactaaatatgccaaaatttatgaagatctaaagcacacaaatatatctgctactaaa 239  Q
    ||||| |||||| |||||| |||||| | ||||| ||||||||  |||||||||||||||| |||||||||||||    
T  39141362 aacacctataagcctactattaaataggtcaaaacttatgaagtcctaaagcacacaaataaatctgctactaaa 39141288  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 34700188 - 34700280
Alignment:
Q  173 taagtctactactaaatatgccaaaatttatgaagatctaaagcacacaaatatatctgctactaaa-aacaaaattttatgaaagtataatc 264  Q
    |||| ||||||||||||| | ||||||||| |||   ||||||||||| |||| ||||||||||||| |||||||| ||| |||||| |||||    
T  34700188 taagcctactactaaataggtcaaaatttaagaatgcctaaagcacacgaatagatctgctactaaataacaaaatcttacgaaagtctaatc 34700280  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 225
Target Start/End: Complemental strand, 33075712 - 33075594
Alignment:
Q  110 aaaggtttggtgaagtccgaaaacctatttaaaagcct---ttacactaaggttaagtaacacatataagtctactactaaatatgccaaaatttatgaa 206  Q
    |||||| || ||||| | |||| |||||||||||| ||   ||||||||||||  || ||||| |||||| ||||||||||| | | ||||| | |||||    
T  33075712 aaaggtctgatgaagcctgaaagcctatttaaaagactattttacactaaggtctagcaacacctataagcctactactaaaaaggtcaaaactcatgaa 33075613  T
Q  207 gatctaaagcacacaaata 225  Q
    |  |||||||| |||||||    
T  33075612 ggcctaaagcatacaaata 33075594  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 22138182 - 22138108
Alignment:
Q  165 aacacatataagtctactactaaatatgccaaaatttatgaagatctaaagcacacaaatatatctgctactaaa 239  Q
    ||||||| |||| ||||| ||||||| ||||||| |||| ||| |||||||||||||||||| | ||||||||||    
T  22138182 aacacatgtaagcctactcctaaataggccaaaacttattaaggtctaaagcacacaaatatgtttgctactaaa 22138108  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 264
Target Start/End: Complemental strand, 32876698 - 32876598
Alignment:
Q  165 aacacatataagtctactactaaatatgccaaaatttatgaagatctaaagcacacaaatatatctgctactaaa-aacaaaattttatgaaagtataat 263  Q
    ||||| |||||| ||||||||||||| | | ||| ||||||||  ||||||| ||||||||| |||||||||||| ||| |||| ||| |||||| ||||    
T  32876698 aacacctataagcctactactaaataggtctaaacttatgaaggcctaaagcgcacaaatatgtctgctactaaataacgaaatcttacgaaagtctaat 32876599  T
Q  264 c 264  Q
    |    
T  32876598 c 32876598  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 47297863 - 47297775
Alignment:
Q  177 tctactactaaatatgccaaaatttatgaagatctaaagcacacaaatatatctgctactaaa-aacaaaattttatgaaagtataatc 264  Q
    |||||||||||||||| ||||| ||||||||| ||||||||||| | ||| |||| ||||||| ||| |||| ||| |||||| |||||    
T  47297863 tctactactaaatatgtcaaaacttatgaagacctaaagcacacgattatgtctggtactaaacaacgaaatcttacgaaagtctaatc 47297775  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 4302455 - 4302527
Alignment:
Q  147 tttacactaaggttaagtaacacatataagtctactactaaatatgccaaaatttatgaagatctaaagcaca 219  Q
    |||||||||||  | ||| |||| |||||||||||||||||||| ||||||  |||||||| |||||| ||||    
T  4302455 tttacactaagacttagtcacacctataagtctactactaaataggccaaatcttatgaaggtctaaaacaca 4302527  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 18942322 - 18942396
Alignment:
Q  165 aacacatataagtctactactaaatatgccaaaatttatgaagatctaaagcacacaaatatatctgctactaaa 239  Q
    ||||||| |||| ||| | ||||||| ||||||| |||| |||  ||||||||||||||||| | ||||||||||    
T  18942322 aacacatgtaagcctattcctaaataggccaaaacttattaaggcctaaagcacacaaatatgtttgctactaaa 18942396  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 29399145 - 29399091
Alignment:
Q  165 aacacatataagtctactactaaatatgccaaaatttatgaagatctaaagcaca 219  Q
    ||||| |||||| ||||||||||||| ||||||| |||||||||  |||||||||    
T  29399145 aacacctataagactactactaaataggccaaaacttatgaagacataaagcaca 29399091  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 232
Target Start/End: Original strand, 1189822 - 1189929
Alignment:
Q  128 gaaaacctatttaaaagcct---ttacactaaggttaagtaacacatataagtctactactaaatatgccaaaatttatgaagatctaaagcacacaaat 224  Q
    |||| |||||||||||| ||   ||||||||||  | || ||||| |||||| ||| ||||||||| | ||||| |||||||| |||||||||||| |||    
T  1189822 gaaagcctatttaaaagtctatattacactaagacttagcaacacctataagcctattactaaataggtcaaaacttatgaaggtctaaagcacacgaat 1189921  T
Q  225 atatctgc 232  Q
    || |||||    
T  1189922 atgtctgc 1189929  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 6103770 - 6103716
Alignment:
Q  165 aacacatataagtctactactaaatatgccaaaatttatgaagatctaaagcaca 219  Q
    ||||||| |||| ||||||||||||| ||||||| ||||||||  ||||||||||    
T  6103770 aacacatgtaagcctactactaaataggccaaaacttatgaaggcctaaagcaca 6103716  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 225
Target Start/End: Complemental strand, 33406327 - 33406229
Alignment:
Q  129 aaaacctatttaaaagcct---ttacactaaggttaagtaacacatataagtctactactaaatatgccaaaatttatgaagatctaaagcacacaaata 225  Q
    ||||||||||||||||| |   ||||||||||||  ||| ||||  ||||||||||||||||| | | ||||  |||||||| ||| |||||||||||||    
T  33406327 aaaacctatttaaaagcttattttacactaaggtctagtgacaccgataagtctactactaaacaagtcaaatcttatgaaggtct-aagcacacaaata 33406229  T

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