View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_low_42 (Length: 262)
Name: NF19297_low_42
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_low_42 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 28522675 - 28522433
Alignment:
| Q |
18 |
atttaagcttgaagatcatatgagcaatataatagatcaaagaggtgagggagcaagataccagtgacagcaggacgtaggttgacaaaggcaaaagaaa |
117 |
Q |
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| T |
28522675 |
atttaagcttgaagatcatatgagcaata--atagatcaaagaggtgagggagcaagataccagtgacagcaggacgtaggttgacaaaggcaaaagaaa |
28522578 |
T |
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| Q |
118 |
gatcagttgtatgaaacactgagctatggtggatcttgtaaggtccaaaatcatagtattcaacagccatctttatttacacccccaaataaaagtaaca |
217 |
Q |
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| T |
28522577 |
gatcagttgtatgaaacactgagctatggtggatcttgtaaggtccaaaatcatagtattcaacagccatctttatttacacccccaaataaaagtaaca |
28522478 |
T |
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| Q |
218 |
ttaatctcatatatggataaagaaaatacaaagttaacatttcat |
262 |
Q |
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| T |
28522477 |
ttaatctcatatatggataaagaaaatacaaagttaacatttcat |
28522433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 68 - 259
Target Start/End: Complemental strand, 28456641 - 28456451
Alignment:
| Q |
68 |
gagcaagataccagtgacagcaggacgtaggttgacaaaggcaaaagaaagatcagttgtatgaaacactgagctatggtggatcttgtaaggtccaaaa |
167 |
Q |
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| T |
28456641 |
gagcaagataccaggcacagcaggacgcaggttgacaaaggcaaaagaaagatcagttgtatgaaacactgagctatggtggatcttgtaaggtccaaag |
28456542 |
T |
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| Q |
168 |
tcatagtattcaacagccatcttta-tttacacccccaaataaaagtaacattaatctcatatatggataaagaaaatacaaagttaacattt |
259 |
Q |
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| T |
28456541 |
tcatagtattcaacagccatctatattttagacccc--aataaaagtaacattaatctcatatttggatacagaaaatacaaagttaacattt |
28456451 |
T |
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