View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_low_44 (Length: 259)
Name: NF19297_low_44
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 36220454 - 36220211
Alignment:
| Q |
1 |
attctcacgtcaatctcgcaatctttacttcagaaaaggaccgaaattacaagttggcggactccagtggtaatttttcagcaaaacactgtccttccct |
100 |
Q |
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| T |
36220454 |
attctcacgtcaatctcgcaatctttacttcagaaaaggaccgaaattacaagttggcggactccagtggtaatttttcagcaaaacactgttcttccct |
36220355 |
T |
|
| Q |
101 |
tgacagtctggtaaacaatgcatgtatatgtctatggttcattgaatgtataagagaatactaatattatagtttacaagtctaaccattcttgtaaaag |
200 |
Q |
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| T |
36220354 |
tgacagtctggtaaacaatgcatgtatatgtctatggttcattgaatgtctaagagaatactaatattatagtttacaagtctaaccattcttgtaaaag |
36220255 |
T |
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| Q |
201 |
tagcggtatgttaaaacaatttttcaaaaaacgaaagtagttgt |
244 |
Q |
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| T |
36220254 |
tagcggtatgtttaaacaatttttcaaaaaacgaaagtagttgt |
36220211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 230
Target Start/End: Complemental strand, 36225360 - 36225254
Alignment:
| Q |
126 |
atatgtctatggttcattgaatgtataagagaatactaatat--tatagtttacaagtctaaccattcttgtaaaagtagcggtatgttaaaacaatttt |
223 |
Q |
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| T |
36225360 |
atatgtttatagtccattaaatgtttaagagaatattaatatattataatttacaagtctaaccattcttgtaagagtaatggcatgttaaaacaacttt |
36225261 |
T |
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| Q |
224 |
tcaaaaa |
230 |
Q |
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| ||||| |
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| T |
36225260 |
ttaaaaa |
36225254 |
T |
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