View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_low_45 (Length: 256)
Name: NF19297_low_45
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 238
Target Start/End: Complemental strand, 11237102 - 11236870
Alignment:
| Q |
6 |
aggagcagagaggataagctgagagggcgaatttgcgagaggagttggcgaaggctaagacgagatggaggcgcgtggtggacaagtgaaggtgtttttt |
105 |
Q |
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| T |
11237102 |
aggaggagagaggataagctgagagggcgaatttgcgagaggaattggcgaaggctaagacgagatggaggcgcgtggtggacacgtgaaggtgtttttt |
11237003 |
T |
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| Q |
106 |
gatgaatttgggatcggagatgagagatttccaggacttacagacggattggagttgcatgaggaatttgaccggaagtctggagagaatctccgctacg |
205 |
Q |
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| T |
11237002 |
gatgaatttgggatcggagatgagagatttccaggacttacagacggattggagttgcatgaggtatttgactggcagcctggagagaatctccgcgacg |
11236903 |
T |
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| Q |
206 |
atctcgaatggaagagttggaatggttgatgag |
238 |
Q |
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| T |
11236902 |
atctcgaatggaagagtcggaatggttgatgag |
11236870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 78 - 227
Target Start/End: Original strand, 7169404 - 7169553
Alignment:
| Q |
78 |
gcgtggtggacaagtgaaggtgttttttgatgaatttgggatcggagatgagagatttccaggacttacagacggattggagttgcatgaggaatttgac |
177 |
Q |
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| T |
7169404 |
gcgtggttgacaagcgaaggtgattcttagcgaattttgaatcggagataagagatttccaggacttacagacggattggagttgcatgagaaacttgac |
7169503 |
T |
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| Q |
178 |
cggaagtctggagagaatctccgctacgatctcgaatggaagagttggaa |
227 |
Q |
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| T |
7169504 |
tggaagcctggagagaatttccgccacaatctcgaatggaagagtgggaa |
7169553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 75 - 227
Target Start/End: Original strand, 7156899 - 7157051
Alignment:
| Q |
75 |
ggcgcgtggtggacaagtgaaggtgttttttgatgaatttgggatcggagatgagagatttccaggacttacagacggattggagttgcatgaggaattt |
174 |
Q |
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| T |
7156899 |
ggcgcgtggttgacacatgaaggtgctttttggcgaatttgtgatcgaagatgagagatttccattacttacagacgcattggagttgcatgagagactt |
7156998 |
T |
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| Q |
175 |
gaccggaagtctggagagaatctccgctacgatctcgaatggaagagttggaa |
227 |
Q |
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| T |
7156999 |
cacgggaagccgggagagaatctctacaacgagatcgaatggaagagtcggaa |
7157051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 7161516 - 7161579
Alignment:
| Q |
132 |
atttccaggacttacagacggattggagttgcatgaggaatttgaccggaagtctggagagaat |
195 |
Q |
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| T |
7161516 |
atttccaggatttgcagaccgatttgagttgcatgagggatttgactggaagcctggaaagaat |
7161579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 24722663 - 24722589
Alignment:
| Q |
109 |
gaatttgggatcggagatgagagatttccaggacttacagacggattggagttgcatgaggaatttgaccggaag |
183 |
Q |
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| T |
24722663 |
gaatttaggatgggagatgaatgatttccaggacttgcagacacatttgaattgcatgagggacttgaccggaag |
24722589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 43991338 - 43991292
Alignment:
| Q |
122 |
gagatgagagatttccaggacttacagacggattggagttgcatgag |
168 |
Q |
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| T |
43991338 |
gagataagagatttccaggacttgcagatgcattggagttgcatgag |
43991292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 2679178 - 2679242
Alignment:
| Q |
110 |
aatttgggatcggagatgagagatttccaggacttacagacggattggagttgcatgaggaattt |
174 |
Q |
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| T |
2679178 |
aattttggatcggagatcagagatttccatgacttgcagacacatcggagttgaaggaggaattt |
2679242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 2687085 - 2687149
Alignment:
| Q |
110 |
aatttgggatcggagatgagagatttccaggacttacagacggattggagttgcatgaggaattt |
174 |
Q |
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| T |
2687085 |
aattttggatcggagatcagagatttccatgacttgcagacacatcggagttgaaggaggaattt |
2687149 |
T |
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