View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_low_50 (Length: 252)
Name: NF19297_low_50
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 1539972 - 1540203
Alignment:
| Q |
15 |
gagaatattagctttggagaactttgcttgtgttttgtgttatagtttgattatgagacatatatgcttgcttcaaacagaaggttcttattattaaaac |
114 |
Q |
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| T |
1539972 |
gagaatattagctttggagaactttgcttgtgttttgtgttatagtttgattatgagacatatatgcttgcttcaaacagaaggttcttattattaaaaa |
1540071 |
T |
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| Q |
115 |
aaataaaagaaattgtattctttcacatctgaaataaacaaaaagaagcagacacatgttatttgtttatgaatatgttaacaacaatgtgacattgtgt |
214 |
Q |
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| T |
1540072 |
aaatataagaaattgtattctttcacatctgaaataaacaaaaagaagcagacacgtgttatttgtttatgaatatgttaacaacaatgtgacattgtgt |
1540171 |
T |
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| Q |
215 |
gagtgtgaccactttaaagtattttctcaact |
246 |
Q |
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| T |
1540172 |
gagtgtgaccactttaaagtattttctcaact |
1540203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 130 - 246
Target Start/End: Complemental strand, 1597998 - 1597882
Alignment:
| Q |
130 |
tattctttcacatctgaaataaacaaaaagaagcagacacatgttatttgtttatgaatatgttaacaacaatgtgacattgtgtgagtgtgaccacttt |
229 |
Q |
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| T |
1597998 |
tattcattcacatctgaaatgaacaaaaagaagcatacacatgttagttgtttatgaattggttaacaacaatgtgacattgtgtgagtgtgaccacatt |
1597899 |
T |
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| Q |
230 |
aaagtattttctcaact |
246 |
Q |
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| T |
1597898 |
aaagtgctttctcaact |
1597882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 1598155 - 1598057
Alignment:
| Q |
15 |
gagaatattagctttggagaactttgcttgtgttttgtgttatagtttgattatgagacatatatgcttgcttcaaacag-aaggttcttattattaaaa |
113 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||| |
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| T |
1598155 |
gagaatattagctttggagaactttgcttgt-ttttgtcttatagtttgattatgagacatatatggttgcttcaaacagaaagtttcttattattaaaa |
1598057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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