View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_low_53 (Length: 248)
Name: NF19297_low_53
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_low_53 |
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| [»] chr3 (5 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 2441437 - 2441684
Alignment:
| Q |
1 |
atgagtattctccgtataatattcatggagatcatcctaggttatgtgtagattgcttcgttggctcctgcaatggcatactttgttttactgctggtat |
100 |
Q |
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| T |
2441437 |
atgagtattctccgtataatattcatggagatcatcctaggttatgtgtagattgcttcgttggctcctgcaatggcatactttgttttactgctggtat |
2441536 |
T |
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| Q |
101 |
ttataaaaagtctgtcatattatggaacccttccattagaaaaattaaggagtttcccctatttcaaaagccaaattggagtttcactcacatggcattt |
200 |
Q |
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| T |
2441537 |
ttataaaatctctgtcatattatggaacccttccattagaaaaattaaggagtttcccctatttcaaaagccaaattggagtttcactcacatggcgttt |
2441636 |
T |
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| Q |
201 |
ggctttggctatgattcttttaatgataattacaaagtggttgttgtt |
248 |
Q |
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| T |
2441637 |
ggctttggctatgattcttttaatgataattacaaagtggttgttgtt |
2441684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 3754219 - 3754269
Alignment:
| Q |
198 |
tttggctttggctatgattcttttaatgataattacaaagtggttgttgtt |
248 |
Q |
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| T |
3754219 |
tttggctttggctatgattctttaaacgataattacaaggtggttgttgtt |
3754269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 4142569 - 4142519
Alignment:
| Q |
198 |
tttggctttggctatgattcttttaatgataattacaaagtggttgttgtt |
248 |
Q |
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| T |
4142569 |
tttggctttggctatgattcttcaaaggataattacaaggtggttgttgtt |
4142519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 4158379 - 4158329
Alignment:
| Q |
198 |
tttggctttggctatgattcttttaatgataattacaaagtggttgttgtt |
248 |
Q |
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| T |
4158379 |
tttggctttggctatgattcttcaaaggataattacaaggtggttgttgtt |
4158329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 12132708 - 12132754
Alignment:
| Q |
199 |
ttggctttggctatgattcttttaatgataattacaaagtggttgtt |
245 |
Q |
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| T |
12132708 |
ttggctttggctatgattcttgtactgataattacaaggtggttgtt |
12132754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 248
Target Start/End: Complemental strand, 1078615 - 1078566
Alignment:
| Q |
199 |
ttggctttggctatgattcttttaatgataattacaaagtggttgttgtt |
248 |
Q |
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| T |
1078615 |
ttggctttggctacgattcttttaccgagaattacaaggtggttgttgtt |
1078566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 2067505 - 2067457
Alignment:
| Q |
198 |
tttggctttggctatgattcttttaatgataattacaaagtggttgttg |
246 |
Q |
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| T |
2067505 |
tttggttttggctatgattcttttagagatacttacaaggtggttgttg |
2067457 |
T |
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