View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19297_low_56 (Length: 241)
Name: NF19297_low_56
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_low_56 |
 | |
|
| [»] scaffold0491 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 1540274 - 1540494
Alignment:
| Q |
2 |
ttaataatcaccaagtacatcaagaannnnnnnn-gttgaatttgtaaaccttgagattttgattgaaaaaattgcattacctttatattttaattaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| || |
|
|
| T |
1540274 |
ttaataatcaccaagtacatcaagaatttttttttgttgaatttgtaaaccttgagattttgattgaagcaattgcaatacctttatattttaa----tt |
1540369 |
T |
|
| Q |
101 |
caattaacataataattgaaacagaagtagttcaatttatacaaaaacagaaatgtgaatacatatatacttatgtttgatatatcagaacaacaaagtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1540370 |
caattaacataataattgaaacagaagcagttcaatttatacaaaaacagaaatgtgaatacatatatacttatgtttgatatatcagaacaacgaagtt |
1540469 |
T |
|
| Q |
201 |
ttacagaatttttcaacaacttttg |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
1540470 |
ttacagaatttttcaacaacttttg |
1540494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 36 - 204
Target Start/End: Original strand, 1563484 - 1563653
Alignment:
| Q |
36 |
gttgaatttgtaaaccttgagattttgattgaaaaaattgcattacctttatattttaattaattcaattaacataataattgaaacagaagtagttcaa |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1563484 |
gttgaatttgtaaaccttgagattttgattgaagcaattgcaatacctttatcttttaattaattcaattaacataataattgaaacagaagtagtttaa |
1563583 |
T |
|
| Q |
136 |
-tttatacaaaaacagaaatgtgaatacatatatacttatgtttgatatatcagaacaacaaagttttac |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1563584 |
ctttatacaaaaacagaaatgtgaatacatatatacttatgtttgatatatcataacaacaaagttttac |
1563653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 3 - 225
Target Start/End: Complemental strand, 1597648 - 1597430
Alignment:
| Q |
3 |
taataatcaccaagtacatcaagaannnnnnnngttgaatttgtaaaccttgagattttgattgaaaaaattgcattacctttatattttaattaattca |
102 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||| ||||||||| |||||||| || |
|
|
| T |
1597648 |
taataatcaccaagtacatcaaga-tttttcttgttgaaattgtaaaccttgagattttgattgaagcaattgcaatacctttatcttttaatt----ca |
1597554 |
T |
|
| Q |
103 |
attaacataataattgaaacagaagtagttcaattt-atacaaaaacagaaatgtgaatacatatatacttatgtttgatatatcagaacaacaaagttt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1597553 |
attaacataataattgaaacagaagtagttcaattttatacaaaaacagaaatgtgaatacatatatacttatgtttgatatatcagaacaacaatattt |
1597454 |
T |
|
| Q |
202 |
tacagaatttttcaacaacttttg |
225 |
Q |
| |
|
| ||| ||||||||| |||||||| |
|
|
| T |
1597453 |
tgcagcatttttcaagaacttttg |
1597430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 1556450 - 1556539
Alignment:
| Q |
136 |
tttatacaaaaacagaaatgtgaatacatatatacttatgtttgatatatcagaacaacaaagttttacagaatttttcaacaacttttg |
225 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1556450 |
tttatacacaaacaaaaatgtgaatacatatatacttatgtttgatttatcagaacaacaaagttttacagcatttttcaacaacttttg |
1556539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 218
Target Start/End: Complemental strand, 1107178 - 1107005
Alignment:
| Q |
55 |
agattttgattgaaaaaattgcattacctttatattttaatta---attca-attaacataataatt----gaaacagaagtagttc-aatttatacaaa |
145 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||| ||| | ||||||||||||||| ||| || ||||||||| | ||||| |||| |
|
|
| T |
1107178 |
agattttgattgaagtaattgcattacctttattttttaattacatatttacattaacataataattaatggaaccaaaagtagttctattttattcaaa |
1107079 |
T |
|
| Q |
146 |
aacag-aaatgtgaatacatatatacttatgtttgatatatcagaacaacaaagttttacagaatttttcaaca |
218 |
Q |
| |
|
| ||| ||| |||| |||| |||| ||| ||||| ||||| |||||||||| |||||||| |||| |||||| |
|
|
| T |
1107078 |
atcagaaaacatgaagacatttataaatatatttgagatatctgaacaacaaaattttacagcatttgtcaaca |
1107005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 134
Target Start/End: Complemental strand, 1089880 - 1089789
Alignment:
| Q |
39 |
gaatttgtaaaccttgagattttgattgaaaaaattgcattacctttatattttaattaattcaattaacataataattgaaacagaagtagttca |
134 |
Q |
| |
|
|||||||||||||| |||| |||||||||| ||||||| |||||| |||| ||||||||||||||||||||| || |||| |||||||| |
|
|
| T |
1089880 |
gaatttgtaaacctagagaatttgattgaagtaattgcaatacctt----ttttttctaattcaattaacataataatggacccagatgtagttca |
1089789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 18738146 - 18738365
Alignment:
| Q |
3 |
taataatcaccaagtacatcaagaannnnnnnngttgaatttgtaaaccttgagattttgattgaaaaaattgcattacctttatattttaattaattca |
102 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |||||||| || |
|
|
| T |
18738146 |
taataatcaccaagtacatcaagaattttttttgttgaatttgtaaaccttgagatattgattgaatcaattgcaatacctttatcttttaatt----ca |
18738241 |
T |
|
| Q |
103 |
attaacataataattgaaacagaagtagttcaattt-atacaaaaacagaaatgtgaatacatatatacttatgtttgatatatcagaacaacaaagttt |
201 |
Q |
| |
|
||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
18738242 |
gttatcataataattgaaacagaagtaattcaattttatacaaaaacagaaatgtgaatacatatatacttatgtttgatgtatcacaacaacaaagttt |
18738341 |
T |
|
| Q |
202 |
tacagaatttttcaacaacttttg |
225 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
18738342 |
tacagcatttttcaacaacttttg |
18738365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 18743110 - 18743329
Alignment:
| Q |
3 |
taataatcaccaagtacatcaagaannnnnnnngttgaatttgtaaaccttgagattttgattgaaaaaattgcattacctttatattttaattaattca |
102 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |||||||| || |
|
|
| T |
18743110 |
taataatcaccaagtacatcaagaattttttttgttgaatttgtaaaccttgagatattgattgaatcaattgcaatacctttatcttttaatt----ca |
18743205 |
T |
|
| Q |
103 |
attaacataataattgaaacagaagtagttcaattt-atacaaaaacagaaatgtgaatacatatatacttatgtttgatatatcagaacaacaaagttt |
201 |
Q |
| |
|
||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
18743206 |
gttatcataataattgaaacagaagtaattcaattttatacaaaaacagaaatgtgaatacatatatacttatgtttgatgtatcacaacaacaaagttt |
18743305 |
T |
|
| Q |
202 |
tacagaatttttcaacaacttttg |
225 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
18743306 |
tacagcatttttcaacaacttttg |
18743329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 18748074 - 18748294
Alignment:
| Q |
3 |
taataatcaccaagtacatcaagaannnnnnnn-gttgaatttgtaaaccttgagattttgattgaaaaaattgcattacctttatattttaattaattc |
101 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |||||||| | |
|
|
| T |
18748074 |
taataatcaccaagtacatcaagaatttttttttgttgaatttgtaaaccttgagatattgattgaatcaattgcaatacctttatcttttaatt----c |
18748169 |
T |
|
| Q |
102 |
aattaacataataattgaaacagaagtagttcaattt-atacaaaaacagaaatgtgaatacatatatacttatgtttgatatatcagaacaacaaagtt |
200 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||| |
|
|
| T |
18748170 |
agttaacataataattgaaacagaagtaattcaattttatacaaaaacagaaatgtgaatacatatgtacttatgtttgatgtatcacaacaacaaagtt |
18748269 |
T |
|
| Q |
201 |
ttacagaatttttcaacaacttttg |
225 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
18748270 |
ttacagcatttttcaacaacttttg |
18748294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 4915 - 5135
Alignment:
| Q |
3 |
taataatcaccaagtacatcaag-aannnnnnnngttgaatttgtaaaccttgagattttgattgaaaaaattgcattacctttatattttaattaattc |
101 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |||||||| | |
|
|
| T |
4915 |
taataatcaccaagtacatcaagtaattttttttgttgaatttgtaaaccttgagatattgattgaatcaattgcaatacctttatcttttaatt----c |
5010 |
T |
|
| Q |
102 |
aattaacataataattgaaacagaagtagttcaattt-atacaaaaacagaaatgtgaatacatatatacttatgtttgatatatcagaacaacaaagtt |
200 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
5011 |
agttaacataataattgaaacagaagtaattcaattttatacaaaaacagaaatgtgaatacatatatacttatgtttgatgtatcacaacaacaaagtt |
5110 |
T |
|
| Q |
201 |
ttacagaatttttcaacaacttttg |
225 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
5111 |
ttacagcatttttcaacaacttttg |
5135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University