View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_low_57 (Length: 239)
Name: NF19297_low_57
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_low_57 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 17493882 - 17494066
Alignment:
| Q |
18 |
gaatagggagtataatagtacatttagcccttagattgagattgaccaaacaacaattacc-gcctttacacaaaaaacaaccgtagtactaccgactaa |
116 |
Q |
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| T |
17493882 |
gaatagggagtataatagtacatttagcccttagattgaaattgaccaaccaacaaacacccgcctttacacaaaa-acaaccgtagtactaccgactaa |
17493980 |
T |
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| Q |
117 |
taactgttgtggatgtgttctcaatggaatttattatttttggtatacaattgtgttgataatgatttaagtcagtggtttcttat |
202 |
Q |
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| T |
17493981 |
taactgttgtggatgtgttctcaatggaatttattatttttggtatacaattgtgttgataatgatttaagtcagtggtttcttat |
17494066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 17559332 - 17559148
Alignment:
| Q |
18 |
gaatagggagtataatagtacatttagcccttagattgagattgaccaaacaacaattacc-gcctttacacaaaaaacaaccgtagtactaccgactaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
17559332 |
gaatagggagtataatagtacatttagcccttagattgaaattgaccaaccaacaaacacccgcctttacacaaaaa-caaccgtagtactaccgactaa |
17559234 |
T |
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| Q |
117 |
taactgttgtggatgtgttctcaatggaatttattatttttggtatacaattgtgttgataatgatttaagtcagtggtttcttat |
202 |
Q |
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| T |
17559233 |
taactgttgtggatgtgttctcaatggaatttattatttttggtatacaattgtgttgataatgatttaagtcagtggtttcttat |
17559148 |
T |
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