View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_low_61 (Length: 231)
Name: NF19297_low_61
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_low_61 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 32746818 - 32747014
Alignment:
| Q |
19 |
aaaattccatcaaagttggtatcaaagagagatagatattcaagagacttgagactagtgatgaaagatggaatatttccaacaaaattattggaggata |
118 |
Q |
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| T |
32746818 |
aaaattccatcaaagttggtatcaaagagagatagatattcaagagacttgagactagtgatgaaagatggaatatttccaacaaaattattggaggata |
32746917 |
T |
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| Q |
119 |
aatcaagtactcggaggtttgtcaagttgctaaggcaatgtggaaaatcaccactcattctatttctgctgaggtcaagttcctgtaaattcttcat |
215 |
Q |
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| T |
32746918 |
aatcaagtacttggaggtttgtcaagttgctaaggcaatgtggaaaatcaccactcattctatttctgctgaggtcaagttcctgtaaattcttcat |
32747014 |
T |
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Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 4913807 - 4914003
Alignment:
| Q |
19 |
aaaattccatcaaagttggtatcaaagagagatagatattcaagagacttgagactagtgatgaaagatggaatatttccaacaaaattattggaggata |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
4913807 |
aaaattccatcaaagttggtatcaaagagagatagatattcaagagacttgagactaatgatgaaagatggaatgtttccaacaaaattatttgaggata |
4913906 |
T |
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| Q |
119 |
aatcaagtactcggaggtttgtcaagttgctaaggcaatgtggaaaatcaccactcattctatttctgctgaggtcaagttcctgtaaattcttcat |
215 |
Q |
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|||||||||||| |||| |||||||||| |||||||| || ||||||| ||||||||||| |||||||||||||||||||||||| | ||||||||| |
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| T |
4913907 |
aatcaagtactctgaggcttgtcaagtttctaaggcattgaggaaaataaccactcattccatttctgctgaggtcaagttcctgcagattcttcat |
4914003 |
T |
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