View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19297_low_63 (Length: 227)

Name: NF19297_low_63
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19297_low_63
NF19297_low_63
[»] chr4 (2 HSPs)
chr4 (1-210)||(1920760-1920966)
chr4 (165-198)||(22496743-22496776)
[»] chr7 (5 HSPs)
chr7 (1-210)||(17494378-17494584)
chr7 (1-210)||(17558630-17558836)
chr7 (150-210)||(37496448-37496508)
chr7 (150-210)||(2849251-2849311)
chr7 (160-200)||(27234509-27234549)
[»] chr8 (3 HSPs)
chr8 (153-210)||(27868379-27868436)
chr8 (153-198)||(44225975-44226020)
chr8 (150-202)||(39998167-39998219)
[»] chr3 (1 HSPs)
chr3 (153-210)||(39329804-39329861)
[»] chr2 (2 HSPs)
chr2 (153-210)||(31592546-31592603)
chr2 (153-209)||(11726776-11726832)
[»] chr6 (1 HSPs)
chr6 (150-210)||(34441887-34441947)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 1920966 - 1920760
Alignment:
Q  1 accattaaccactatatttcatctctatcattctcttcatataatatcactcctttcgtcccattataagtaggtgttttattcatttcacacatatatt 100  Q
    ||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||  |    
T  1920966 accattaaccactgtattttatctctatcattctcttcgtataatatcactcctttcgccccattattagtaggtgttttattcatttcacacatat--t 1920869  T
Q  101 aagnnnnnnntgtataagtgaaagaaagaaaaaatgatttttagtgttctgtaaagttgaatacattaaattgagagcgatgaaaatagtattaattaaa 200  Q
    |||       ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1920868 aagaaaaaa-tgtataagtgaaagaaagaaaaaatgatttttagtgtcctgtaaagttgaatacattaaattgagagcgatgaaaatagtattaattaaa 1920770  T
Q  201 attacaattg 210  Q
    ||||||||||    
T  1920769 attacaattg 1920760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 22496743 - 22496776
Alignment:
Q  165 attaaattgagagcgatgaaaatagtattaatta 198  Q
    ||||||||||||||||||||| ||||||||||||    
T  22496743 attaaattgagagcgatgaaagtagtattaatta 22496776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 17494584 - 17494378
Alignment:
Q  1 accattaaccactatatttcatctctatcattctcttcatataatatcactcctttcgtcccattataagtaggtgttttattcatttcacacatatatt 100  Q
    ||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  17494584 accattaaccactatattttatctctatcattttcctcatataatatcactcctttcgtcccattataagtaggtgttttattcatttcacac--atatt 17494487  T
Q  101 aagnnnnnnntgtataagtgaaagaaagaaaaaatgatttttagtgttctgtaaagttgaatacattaaattgagagcgatgaaaatagtattaattaaa 200  Q
    |||       ||||||||| ||||||||||||||| ||||||||| |  ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17494486 aag-aaaaaatgtataagtaaaagaaagaaaaaattatttttagtatcttgtaaagttgaatacattaaattgagagcaatgaaaatagtattaattaaa 17494388  T
Q  201 attacaattg 210  Q
    ||||||||||    
T  17494387 attacaattg 17494378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 17558630 - 17558836
Alignment:
Q  1 accattaaccactatatttcatctctatcattctcttcatataatatcactcctttcgtcccattataagtaggtgttttattcatttcacacatatatt 100  Q
    ||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  17558630 accattaaccactatattttatctctatcattttcctcatataatatcactcctttcgtcccattataagtaggtgttttattcatttcacac--atatt 17558727  T
Q  101 aagnnnnnnntgtataagtgaaagaaagaaaaaatgatttttagtgttctgtaaagttgaatacattaaattgagagcgatgaaaatagtattaattaaa 200  Q
    |||       ||||||||| ||||||||||||||| ||||||||| |  ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17558728 aag-aaaaaatgtataagtaaaagaaagaaaaaattatttttagtatcttgtaaagttgaatacattaaattgagagcaatgaaaatagtattaattaaa 17558826  T
Q  201 attacaattg 210  Q
    ||||||||||    
T  17558827 attacaattg 17558836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 37496448 - 37496508
Alignment:
Q  150 tgtaaagttgaatacattaaattgagagcgatgaaaatagtattaattaaaattacaattg 210  Q
    |||||||| ||||| ||| ||||||||| ||||||| |||||||||||||| ||| |||||    
T  37496448 tgtaaagtagaatatattgaattgagagtgatgaaagtagtattaattaaagttataattg 37496508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 2849311 - 2849251
Alignment:
Q  150 tgtaaagttgaatacattaaattgagagcgatgaaaatagtattaattaaaattacaattg 210  Q
    |||||||| ||||| ||| ||||||||| | ||||| |||||||||||| ||||| |||||    
T  2849311 tgtaaagtagaatatattgaattgagagtggtgaaagtagtattaattagaattataattg 2849251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 27234549 - 27234509
Alignment:
Q  160 aatacattaaattgagagcgatgaaaatagtattaattaaa 200  Q
    |||| ||||||||| ||| ||||||||||||||||||||||    
T  27234549 aatatattaaattgtgagtgatgaaaatagtattaattaaa 27234509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 27868379 - 27868436
Alignment:
Q  153 aaagttgaatacattaaattgagagcgatgaaaatagtattaattaaaattacaattg 210  Q
    ||||| ||||| ||| ||||||||  ||||||| |||||||||||||||||| |||||    
T  27868379 aaagtagaatatattgaattgagaatgatgaaagtagtattaattaaaattataattg 27868436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 44225975 - 44226020
Alignment:
Q  153 aaagttgaatacattaaattgagagcgatgaaaatagtattaatta 198  Q
    ||||| ||||| ||||||| |||||||||||||||| |||||||||    
T  44225975 aaagtagaatatattaaatagagagcgatgaaaataatattaatta 44226020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 39998219 - 39998167
Alignment:
Q  150 tgtaaagttgaatacattaaattgagagcgatgaaaatagtattaattaaaat 202  Q
    |||||||| ||||| ||| ||||||||| | ||||| ||||||||||||||||    
T  39998219 tgtaaagtagaatatattgaattgagagtggtgaaagtagtattaattaaaat 39998167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 39329804 - 39329861
Alignment:
Q  153 aaagttgaatacattaaattgagagcgatgaaaatagtattaattaaaattacaattg 210  Q
    ||||| ||||| ||| ||||||||| ||||||| |||||||||||| ||||| |||||    
T  39329804 aaagtagaatatattgaattgagagtgatgaaagtagtattaattagaattataattg 39329861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 31592603 - 31592546
Alignment:
Q  153 aaagttgaatacattaaattgagagcgatgaaaatagtattaattaaaattacaattg 210  Q
    ||||| ||||| ||| ||||||||| |||||||||| ||||||||||| ||| |||||    
T  31592603 aaagtagaatatattgaattgagagtgatgaaaataatattaattaaagttataattg 31592546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 11726776 - 11726832
Alignment:
Q  153 aaagttgaatacattaaattgagagcgatgaaaatagtattaattaaaattacaatt 209  Q
    ||||| ||||| ||| |||| |||| ||||||| |||||||||||||||||| ||||    
T  11726776 aaagtagaatatattgaattaagagtgatgaaagtagtattaattaaaattataatt 11726832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 34441947 - 34441887
Alignment:
Q  150 tgtaaagttgaatacattaaattgagagcgatgaaaatagtattaattaaaattacaattg 210  Q
    |||||| | ||||| |||||||| |||| ||||||| |||||||||||||| ||| |||||    
T  34441947 tgtaaattagaatatattaaattaagagtgatgaaagtagtattaattaaagttataattg 34441887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University