View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_low_66 (Length: 225)
Name: NF19297_low_66
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_low_66 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 42055220 - 42055024
Alignment:
| Q |
14 |
aatattaagacaatgtatgagcatttgaacatatattatatttatgaatcttattccatatagaaagacaataattataagaacaaaactaaagtttaca |
113 |
Q |
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| T |
42055220 |
aatattaagacaatgtatgagcatttgaacatatattatatttatgaatcttattccatatagaaagacaataattataagaacaaaactaaagtttaca |
42055121 |
T |
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| Q |
114 |
agaaaatggtaacctgcaatggcaagtttggattcatcatggtcatgggcaggtaatgtatcttggacgacccctgccattggagagacaggaatgt |
210 |
Q |
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| T |
42055120 |
agaaaatggtaacctgcaatggcaagtttggattcatcatggtcatgggcaggtaatgtatcttggacgacccctgccattggagagacaggaatgt |
42055024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 154
Target Start/End: Complemental strand, 42071276 - 42071243
Alignment:
| Q |
121 |
ggtaacctgcaatggcaagtttggattcatcatg |
154 |
Q |
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| T |
42071276 |
ggtaacctgcaatgggaagtttggattcatcatg |
42071243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 154
Target Start/End: Complemental strand, 42079502 - 42079469
Alignment:
| Q |
121 |
ggtaacctgcaatggcaagtttggattcatcatg |
154 |
Q |
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| T |
42079502 |
ggtaacctgcaatggcaagtttggattgatcatg |
42079469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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