View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_low_7 (Length: 438)
Name: NF19297_low_7
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 16 - 420
Target Start/End: Complemental strand, 1948308 - 1947904
Alignment:
| Q |
16 |
atcaagcaaatgtgcactttcggagactttaatacttggaaactcttcaatcatcttgaaaggtgaagtttgtttaaacaaacctataaacatgaaaatc |
115 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1948308 |
atcaagcaaatgtgcactttcggagactttaatgcttggaaactcttcaatcatcttgaaaggtgaagtttgtttaaacaaacctataaacatgaaaatc |
1948209 |
T |
|
| Q |
116 |
aacatttcatcagcagcttcttttgacgagaatttgaactcaagcaattttctcaaaacaaataacggaatttgattctcgagcataacaatgtctctca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1948208 |
aacatttcatcagcagcttcttttgacgagaatttgaactcaagcaattttctcaaaacaaataacggaatttgattctcgagcataacaatgtctctca |
1948109 |
T |
|
| Q |
216 |
acatcgcattatgagctgattttctaccagcatagtcaactaaatgtgacatgctagatgaaactatcctttttgttgcaccttcttgcattgcataaat |
315 |
Q |
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| T |
1948108 |
acatcgcattatgagctgattttctaccagcatagtcaactaaatgtgacatgctagatgaaactaccctttttgttgcaccttcttgcattgcataaat |
1948009 |
T |
|
| Q |
316 |
ttgaagtaactcaagtaagaatgatgcatcaacgatcatcatccaaaccatcgtttctccattcaaatctaagaatttgtggtaacatcctctaaccctt |
415 |
Q |
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| T |
1948008 |
ttgaagtaactcaagtaagaatgatgcatcaacgatcatcatccaaaccatcgtttctccgttcaaatctaagaatttgtggtaacatcctctaaccctt |
1947909 |
T |
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| Q |
416 |
tgttc |
420 |
Q |
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||||| |
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| T |
1947908 |
tgttc |
1947904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 16 - 420
Target Start/End: Original strand, 1978098 - 1978502
Alignment:
| Q |
16 |
atcaagcaaatgtgcactttcggagactttaatacttggaaactcttcaatcatcttgaaaggtgaagtttgtttaaacaaacctataaacatgaaaatc |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1978098 |
atcaagcaaatgtgcactttcggagactttaatgcttggaaacttttcaatcatcttgaaaggtgaagtttgtttaaacaaacctataaacatgaaaatc |
1978197 |
T |
|
| Q |
116 |
aacatttcatcagcagcttcttttgacgagaatttgaactcaagcaattttctcaaaacaaataacggaatttgattctcgagcataacaatgtctctca |
215 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| | ||| |||||||||||||| ||||||||||||||| ||| |
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| T |
1978198 |
aacatttcatcagcagcttcttttgatgagagtttgaactcaagcaattttctcaaaaccattaatggaatttgattctcaagcataacaatgtctttca |
1978297 |
T |
|
| Q |
216 |
acatcgcattatgagctgattttctaccagcatagtcaactaaatgtgacatgctagatgaaactatcctttttgttgcaccttcttgcattgcataaat |
315 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| |||| | |||||||||||||||||||||| |
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| T |
1978298 |
acattgcattatgagctgattttctaccagcatagtcaactaaatgtgacatgcttgacaaaacttccctctttggttcaccttcttgcattgcataaat |
1978397 |
T |
|
| Q |
316 |
ttgaagtaactcaagtaagaatgatgcatcaacgatcatcatccaaaccatcgtttctccattcaaatctaagaatttgtggtaacatcctctaaccctt |
415 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| |
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| T |
1978398 |
ttgaagtaactcgagtaagaatgatgcatcaacgatcatcatccaaaccatcgtttctccgttcaaatctaagaatttgtggtaacatgctctaactctt |
1978497 |
T |
|
| Q |
416 |
tgttc |
420 |
Q |
| |
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||||| |
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| T |
1978498 |
tgttc |
1978502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 20 - 420
Target Start/End: Original strand, 1985017 - 1985417
Alignment:
| Q |
20 |
agcaaatgtgcactttcggagactttaatacttggaaactcttcaatcatcttgaaaggtgaagtttgtttaaacaaacctataaacatgaaaatcaaca |
119 |
Q |
| |
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||||||||||||| || |||||| ||| | ||| ||||||||| |||||| || |||||| | | ||||||||| | |||| |||| || ||||||| |
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| T |
1985017 |
agcaaatgtgcacactctaagacttgaatgttaggatactcttcaaacatcttaaagggtgaaatctctttaaacaaccttatacacatcaatatcaaca |
1985116 |
T |
|
| Q |
120 |
tttcatcagcagcttcttttgacga---gaatttgaactcaagcaattttctcaaaacaaataacggaatttgattctcgagcataacaatgtctctcaa |
216 |
Q |
| |
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||||||||| ||||| ||| || |||||| |||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||| || ||||| |
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| T |
1985117 |
catcatcagcattttcttctgatgaaaagaattttaactcaagcatctttctcaaaacaaataatggaatttgattctcaagcatcacaatatccctcaa |
1985216 |
T |
|
| Q |
217 |
catcgcattatgagctgattttctaccagcatagtcaactaaatgtgacatgctagatgaaactatcctttttgttgcaccttcttgcattgcataaatt |
316 |
Q |
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|| |||||| ||| | || | || ||| |||||| || ||||| |||||| | || |||| || | || ||| | | ||||||||| ||||||| | |
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| T |
1985217 |
aattgcattaggagataatctcctcccaacatagttcacaaaatgagacatgttggaagaaattacctttcttgattc---ttcttgcatggcataaaat |
1985313 |
T |
|
| Q |
317 |
tgaagtaactcaagtaagaatgatgcatcaacgatcatcatccaaaccatcgtttctccattcaaatctaagaatttgtggtaacatcctctaacccttt |
416 |
Q |
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||||| |||||||||| ||||||||||||||| ||||||||||| ||| ||||| ||||||||||| |||||||||||||| ||| |||||| | ||| |
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| T |
1985314 |
tgaaggaactcaagtaggaatgatgcatcaacaatcatcatccacgccaaggtttcgccattcaaatccaagaatttgtggtagcatgctctaatctttt |
1985413 |
T |
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| Q |
417 |
gttc |
420 |
Q |
| |
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|||| |
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|
| T |
1985414 |
gttc |
1985417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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