View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_low_76 (Length: 205)
Name: NF19297_low_76
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_low_76 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 3 - 189
Target Start/End: Complemental strand, 34244640 - 34244456
Alignment:
| Q |
3 |
cttaatcaccgcctgcatcacaagaccttaaatgtataacaccaacgtgcagataaatagcatgggtactccacacatggagaagtaccggtacccgaca |
102 |
Q |
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| T |
34244640 |
cttaatcaccgcctgcatcacaagaccttaa-tgtataacaccaacgtgca-ataaatagcatgggtactccacacatggagaagtaccggtacccgaca |
34244543 |
T |
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| Q |
103 |
cgcatgcgtatcgggtagggtactcgtaacgtacgtaccgaaccggtgcagcaaaaatgtacggcggtggaaaaataaccaaaatgg |
189 |
Q |
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| T |
34244542 |
cgcatgcgtatcgggtacgatactcgtaacgtacgtaccgaaccggtgcagcaaaaatgtacggcggtggaaaaataaccaaaatgg |
34244456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 5934243 - 5934207
Alignment:
| Q |
61 |
agcatgggtactccacacatggagaagtaccggtacc |
97 |
Q |
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| T |
5934243 |
agcatgggtactccaaacatggaggagtaccggtacc |
5934207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 29138649 - 29138613
Alignment:
| Q |
12 |
cgcctgcatcacaagaccttaaatgtataacaccaac |
48 |
Q |
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| T |
29138649 |
cgcctgcatcataagaccttaaatgtaaaacaccaac |
29138613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 111725 - 111689
Alignment:
| Q |
61 |
agcatgggtactccacacatggagaagtaccggtacc |
97 |
Q |
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| T |
111725 |
agcatgggtactccaaacatggagaagtaccggtacc |
111689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 43291306 - 43291270
Alignment:
| Q |
61 |
agcatgggtactccacacatggagaagtaccggtacc |
97 |
Q |
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| T |
43291306 |
agcatgggtactccaaacatggagaagtaccggtacc |
43291270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 30850205 - 30850169
Alignment:
| Q |
61 |
agcatgggtactccacacatggagaagtaccggtacc |
97 |
Q |
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| T |
30850205 |
agcatgggtactccaaacatggagaagtaccggtacc |
30850169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 32920847 - 32920811
Alignment:
| Q |
61 |
agcatgggtactccacacatggagaagtaccggtacc |
97 |
Q |
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| T |
32920847 |
agcatgggtactccaaacatggagaagtaccggtacc |
32920811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 18834604 - 18834642
Alignment:
| Q |
61 |
agcatgggtactccacacatggagaagtaccggtacccg |
99 |
Q |
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| T |
18834604 |
agcatggatactccaaacatggagaagtaccggtacccg |
18834642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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