View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_low_9 (Length: 424)
Name: NF19297_low_9
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 16 - 408
Target Start/End: Original strand, 51328014 - 51328387
Alignment:
| Q |
16 |
gccaagtcagaaattaagaagactcatattggttttgatttgccatgagggtgggcgacatgtccacaaggcctaaattacacggttttcaattaattac |
115 |
Q |
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| T |
51328014 |
gccaagtcagaaattgagaagactcatattggttttgatttgccatgagggtgggcgacatgtccacaaggcctaaattacacggtttt----------- |
51328102 |
T |
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| Q |
116 |
ttattttcaagttttggttggttggaacctataaatcttattattttaattaaccccttaatgatcttccacccctctttattttctgcttattttagtt |
215 |
Q |
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| T |
51328103 |
-------caagttttggttggttggaacctataaatcttattattttaattaaccccttaatgatcttccacccctctttattttctgcttattttagtt |
51328195 |
T |
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| Q |
216 |
ttagaagcttattgttatatttttaatcaacttttcattctatggctgttgtcttcacatgatcatgggagaacatcatgtgagggattttggttcaata |
315 |
Q |
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| T |
51328196 |
ttagaagcttattgttatatttttaatcaacttttcattctatggctgttgtcttcacatgatcatgggaggacatcatgtgaaggattttggttcaata |
51328295 |
T |
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| Q |
316 |
gtactggccatggacatgcacaccatgtataattataataataaaaccataaagaatgaaaacgatgttctttttatcaattcaggtataata |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
51328296 |
gtactggccatggacatgcacaccatgtataattataataataaaaccataaagaatgaaaacgatgttc-tcttatcaattcaggtataata |
51328387 |
T |
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