View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19298_high_10 (Length: 335)
Name: NF19298_high_10
Description: NF19298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19298_high_10 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 30 - 335
Target Start/End: Original strand, 38180399 - 38180704
Alignment:
| Q |
30 |
accgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtag |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180399 |
accgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtag |
38180498 |
T |
|
| Q |
130 |
gtgacaaagtcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38180499 |
gtgacaaagtcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgagatggttgatttgttggtaaggc |
38180598 |
T |
|
| Q |
230 |
gagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgg |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180599 |
gagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgtttggcgaattggagagcagggtttatgtgaccgtgtagtgg |
38180698 |
T |
|
| Q |
330 |
gtatgt |
335 |
Q |
| |
|
|||||| |
|
|
| T |
38180699 |
gtatgt |
38180704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 30 - 335
Target Start/End: Original strand, 38185068 - 38185373
Alignment:
| Q |
30 |
accgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtag |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| ||||||||| || |||| |
|
|
| T |
38185068 |
accgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgttagaaattctgagcagtggcacttaagctcggacctgtag |
38185167 |
T |
|
| Q |
130 |
gtgacaaagtcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggc |
229 |
Q |
| |
|
| || |||||||||||||||||||| ||| || ||||||| ||| |||||||||||||||||||| ||||| |||||||||| ||||||| |||||| |
|
|
| T |
38185168 |
gcgatgaagtcttcgttgctttcgaaatttttaccgtcgtcgtagccatcagagaaggtggcgaaggagaggcctgggatggttggtttgttgataaggc |
38185267 |
T |
|
| Q |
230 |
gagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgg |
329 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38185268 |
cagtgtgtaagtagatagttgtagcaaaagtgacttgtgcgccgaaagaaatgagacgcttggcgaattggagtgcagggtttatgtgaccgtgtagtgg |
38185367 |
T |
|
| Q |
330 |
gtatgt |
335 |
Q |
| |
|
|||||| |
|
|
| T |
38185368 |
gtatgt |
38185373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 39 - 335
Target Start/End: Original strand, 38170594 - 38170890
Alignment:
| Q |
39 |
taagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaag |
138 |
Q |
| |
|
|||||||||||||||| || ||| |||||| |||||| |||||||||||||||||||| |||| ||| ||| ||| |||| || ||||| ||| | | |
|
|
| T |
38170594 |
taagcaagtgaatggatgattttcttgtttggaggagagaatgatatttgtgagaaattctgagccgcgacgcgtaaactcagacatgtaggagacgatg |
38170693 |
T |
|
| Q |
139 |
tcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgta |
238 |
Q |
| |
|
||||||| || | ||||| | || ||||| | |||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||| ||| || |
|
|
| T |
38170694 |
tcttcgtcgccaaaggatttttgaccgtcgtcatagccgtcagagaaggtggcgaaggagaggcccgggatggttggtttgttgataaggcgactgtata |
38170793 |
T |
|
| Q |
239 |
agtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgt |
335 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
38170794 |
agtggatagtggtagcaaaagtgacttttgcgcccaaagaaatgagacgcttggtgaattggagggcagggtttatgtgaccttgtagtgggtatgt |
38170890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University