View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19298_high_12 (Length: 329)
Name: NF19298_high_12
Description: NF19298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19298_high_12 |
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| [»] chr7 (12 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 9 - 329
Target Start/End: Original strand, 36221014 - 36221334
Alignment:
| Q |
9 |
gagatgaagaaccaacaacatgctctgcgtgaatggttgaggcaggtacaaaacatctgctatgatgctgaagatggatttgagttgcaagacaagnnnn |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36221014 |
gagaagaagaaccaacaacatgctctgcgtgaatggttgaggcaggtacaaaacatctgctatgatgctgaagatggatttgagttgcaagacaagaaaa |
36221113 |
T |
|
| Q |
109 |
nnncaatttgtgaaagcttctggcagcactcgaatgaaggtatgccacttgttttcttcctcaaatccaccagctttccgttttaggatgtcacataaaa |
208 |
Q |
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| T |
36221114 |
aataaaattgtgaaagcttctggcagcactcgaatgaaggtatgccacttgttttcttcctcaaatccactagctttccgttttaggatgtcacataaaa |
36221213 |
T |
|
| Q |
209 |
tcaaagagattagaaatagattgaataaggtggcagctgacgggacaaggtttggacttgcgagaatcgatgttgcacctgatcctgttgtgcagaggag |
308 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36221214 |
tcaaagagattagagatagattgaataaggtggcagctgacgggacaaggtttggacttgtgagaatcgatgttgcacctgatcctgttgtgcagaggag |
36221313 |
T |
|
| Q |
309 |
agaattcactcattcatacgt |
329 |
Q |
| |
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||||||||||||||||||||| |
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| T |
36221314 |
agaattcactcattcatacgt |
36221334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 9 - 275
Target Start/End: Original strand, 36217021 - 36217295
Alignment:
| Q |
9 |
gagatgaagaaccaacaacatgctctgcgtgaatggttgaggcaggtacaaaacatctgctatgatgctgaagatg---------gatttgagttgcaag |
99 |
Q |
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|||| |||||||| |||||||| || |||||||||| |||||| | |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36217021 |
gagaagaagaaccggcaacatgccttgtgtgaatggttaaggcagattcaaaacatctgctatgatgctgaagatgtattggatggatttgagttgcaag |
36217120 |
T |
|
| Q |
100 |
acaagnnnnnnncaatttgtgaaagcttctggcagcactcgaatgaaggtatgccacttgttttcttcctcaaatccaccagctttccgttttaggatgt |
199 |
Q |
| |
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||| | |||||||| |||||||||| ||||| || |||||||||||||||| ||||||||||| ||||| | ||||||||||||||||||| |
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| T |
36217121 |
aca-ggagaaagcaatttgttgaagcttctggaagcacacggttgaaggtatgccacttcttttcttcctctaatccgcttgctttccgttttaggatgt |
36217219 |
T |
|
| Q |
200 |
cacataaaatcaaagagattagaaatagattgaataaggtggcagctgacgggacaaggtttggacttgcgagaat |
275 |
Q |
| |
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||| | ||||||||||||||||| |||||||| |||| ||||||||||| ||||| | ||||||||||| |||||| |
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| T |
36217220 |
cacgtcaaatcaaagagattagagatagattggataaagtggcagctgatgggaccaagtttggacttgtgagaat |
36217295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 122 - 283
Target Start/End: Complemental strand, 35982561 - 35982400
Alignment:
| Q |
122 |
aagcttctggcagcactcgaatgaaggtatgccacttgttttcttcctcaaatccaccagctttccgttttaggatgtcacataaaatcaaagagattag |
221 |
Q |
| |
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||||||||||||||||||| | ||||||| ||||||| ||||||||||| ||||||| ||||| ||| |||||||| ||||| ||||||||| ||||| |
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| T |
35982561 |
aagcttctggcagcactcggacgaaggtacgccacttcttttcttcctctaatccacttgcttttcgtcttaggatggcacatcgaatcaaagaaattag |
35982462 |
T |
|
| Q |
222 |
aaatagattgaataaggtggcagctgacgggacaaggtttggacttgcgagaatcgatgttg |
283 |
Q |
| |
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|||||||| |||||||||||||||| ||||| | |||||||||| |||||| ||||||| |
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| T |
35982461 |
gaatagattagataaggtggcagctgatgggactaagtttggacttatgagaattgatgttg |
35982400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 122 - 283
Target Start/End: Complemental strand, 36003973 - 36003812
Alignment:
| Q |
122 |
aagcttctggcagcactcgaatgaaggtatgccacttgttttcttcctcaaatccaccagctttccgttttaggatgtcacataaaatcaaagagattag |
221 |
Q |
| |
|
||||||||||||||||||| | ||||||| ||||||| ||||||||||| ||||||| ||||| ||| |||||||| ||||| ||||||||| ||||| |
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| T |
36003973 |
aagcttctggcagcactcggacgaaggtacgccacttcttttcttcctctaatccacttgcttttcgtcttaggatggcacatcgaatcaaagaaattag |
36003874 |
T |
|
| Q |
222 |
aaatagattgaataaggtggcagctgacgggacaaggtttggacttgcgagaatcgatgttg |
283 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| | |||||||||| |||||| ||||||| |
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|
| T |
36003873 |
gaatagattagataaggtggcagctgatgggactaagtttggacttatgagaattgatgttg |
36003812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 116 - 269
Target Start/End: Complemental strand, 36226446 - 36226293
Alignment:
| Q |
116 |
ttgtgaaagcttctggcagcactcgaatgaaggtatgccacttgttttcttcctcaaatccaccagctttccgttttaggatgtcacataaaatcaaaga |
215 |
Q |
| |
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||||| ||||||| |||||||| | ||||||||| |||| || ||||||||||| | ||||| ||||||||||||| |||| || | ||||||||| |
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| T |
36226446 |
ttgtggaagcttcatgcagcactaggatgaaggtacgccaatttttttcttcctctagtccacttgctttccgttttaagatggcatgtcgaatcaaaga |
36226347 |
T |
|
| Q |
216 |
gattagaaatagattgaataaggtggcagctgacgggacaaggtttggacttgc |
269 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
36226346 |
gattagggatagattgaataaggtggcagctgatgggactaggtttggacttgc |
36226293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 34 - 245
Target Start/End: Complemental strand, 35958634 - 35958415
Alignment:
| Q |
34 |
tgcgtgaatggttgaggcaggtacaaaacatctgctatgatgctgaagatg---------gatttgagttgcaagacaagnnnnnnncaatttgtgaaag |
124 |
Q |
| |
|
||||||||||| |||||||| | ||||| || ||||||||||||||||||| ||||||| |||||||||||| ||| ||||| ||| |
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| T |
35958634 |
tgcgtgaatggctgaggcagattcaaaatatatgctatgatgctgaagatgtattggatggatttgacttgcaagacaagcgaaaa-caagttgtggaag |
35958536 |
T |
|
| Q |
125 |
cttctggcagcactcgaatgaaggtatgccacttgttttcttcctcaaatccaccagctttccgttttaggatgtcacataaaatcaaagagattagaaa |
224 |
Q |
| |
|
||||||| ||||| || |||||||| ||||||||||||||||||| ||| ||| ||||||||||||| ||| | || |||||||||||||||| | |
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|
| T |
35958535 |
cttctggaagcacacgggtgaaggtacgccacttgttttcttcctctaattcacttgctttccgttttaaaatggcgcaccaaatcaaagagattaggga |
35958436 |
T |
|
| Q |
225 |
tagattgaataaggtggcagc |
245 |
Q |
| |
|
||||||| ||||||||||||| |
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|
| T |
35958435 |
tagattggataaggtggcagc |
35958415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 248
Target Start/End: Complemental strand, 35978089 - 35977867
Alignment:
| Q |
34 |
tgcgtgaatggttgaggcaggtacaaaacatctgctatgatgctgaagatg---------gatttgagttgcaagacaagnnnnnnncaatttgtgaaag |
124 |
Q |
| |
|
||||||||||| |||||||| | ||||| || ||||||||||||||||||| ||||| | |||||||||||| ||| ||||||||| |
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| T |
35978089 |
tgcgtgaatggctgaggcagattcaaaatatatgctatgatgctgaagatgtattggatggatttaacttgcaagacaagcgaaag-caagttgtgaaag |
35977991 |
T |
|
| Q |
125 |
cttctggcagcactcgaatgaaggtatgccacttgttttcttcctcaaatccaccagctttccgttttaggatgtcacataaaatcaaagagattagaaa |
224 |
Q |
| |
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||||| | |||| || |||||||| ||||||| ||||||||||| ||||||| | |||||||||||||||| ||| | |||||||||||||||| | |
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|
| T |
35977990 |
cttctcgaagcagacgggtgaaggtacgccacttcttttcttcctctaatccacttgttttccgttttaggatggcacgtcaaatcaaagagattaggga |
35977891 |
T |
|
| Q |
225 |
tagattgaataaggtggcagctga |
248 |
Q |
| |
|
|||| || |||||||||||||||| |
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|
| T |
35977890 |
tagaatggataaggtggcagctga |
35977867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 248
Target Start/End: Complemental strand, 35999501 - 35999279
Alignment:
| Q |
34 |
tgcgtgaatggttgaggcaggtacaaaacatctgctatgatgctgaagatg---------gatttgagttgcaagacaagnnnnnnncaatttgtgaaag |
124 |
Q |
| |
|
||||||||||| |||||||| | ||||| || ||||||||||||||||||| ||||| | |||||||||||| ||| ||||||||| |
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|
| T |
35999501 |
tgcgtgaatggctgaggcagattcaaaatatatgctatgatgctgaagatgtattggatggatttaacttgcaagacaagcgaaag-caagttgtgaaag |
35999403 |
T |
|
| Q |
125 |
cttctggcagcactcgaatgaaggtatgccacttgttttcttcctcaaatccaccagctttccgttttaggatgtcacataaaatcaaagagattagaaa |
224 |
Q |
| |
|
||||| | |||| || |||||||| ||||||| ||||||||||| ||||||| | |||||||||||||||| ||| | |||||||||||||||| | |
|
|
| T |
35999402 |
cttctcgaagcagacgggtgaaggtacgccacttcttttcttcctctaatccacttgttttccgttttaggatggcacgtcaaatcaaagagattaggga |
35999303 |
T |
|
| Q |
225 |
tagattgaataaggtggcagctga |
248 |
Q |
| |
|
|||| || |||||||||||||||| |
|
|
| T |
35999302 |
tagaatggataaggtggcagctga |
35999279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 116 - 248
Target Start/End: Complemental strand, 35947339 - 35947207
Alignment:
| Q |
116 |
ttgtgaaagcttctggcagcactcgaatgaaggtatgccacttgttttcttcctcaaatccaccagctttccgttttaggatgtcacataaaatcaaaga |
215 |
Q |
| |
|
|||||||||||||| | ||||| || ||||| || |||||| ||||||||||| ||||||| | ||| |||||||||||| ||| | |||||||||| |
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|
| T |
35947339 |
ttgtgaaagcttctcgaagcacacgggtgaagttagtccacttcttttcttcctctaatccacttgtttttcgttttaggatggcacgtcaaatcaaaga |
35947240 |
T |
|
| Q |
216 |
gattagaaatagattgaataaggtggcagctga |
248 |
Q |
| |
|
|||||| ||||| || |||||||||||||||| |
|
|
| T |
35947239 |
gattagggatagaatggataaggtggcagctga |
35947207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 35973956 - 35973898
Alignment:
| Q |
33 |
ctgcgtgaatggttgaggcaggtacaaaacatctgctatgatgctgaagatggatttga |
91 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||||| ||||||||||||| |||||| |
|
|
| T |
35973956 |
ctgcgtgaatggctgaggcagattcaaaacatctgctccgatgctgaagatgtatttga |
35973898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 35995368 - 35995310
Alignment:
| Q |
33 |
ctgcgtgaatggttgaggcaggtacaaaacatctgctatgatgctgaagatggatttga |
91 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||||| ||||||||||||| |||||| |
|
|
| T |
35995368 |
ctgcgtgaatggctgaggcagattcaaaacatctgctccgatgctgaagatgtatttga |
35995310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 35926373 - 35926323
Alignment:
| Q |
34 |
tgcgtgaatggttgaggcaggtacaaaacatctgctatgatgctgaagatg |
84 |
Q |
| |
|
||||||||||| |||||||| | ||||| || ||||||||||||||||||| |
|
|
| T |
35926373 |
tgcgtgaatggctgaggcagattcaaaatatatgctatgatgctgaagatg |
35926323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 18126344 - 18126298
Alignment:
| Q |
38 |
tgaatggttgaggcaggtacaaaacatctgctatgatgctgaagatg |
84 |
Q |
| |
|
||||||| ||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
18126344 |
tgaatggcggaggcagatacaaaatatctgctatgatgctgaagatg |
18126298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 269
Target Start/End: Complemental strand, 18126234 - 18126105
Alignment:
| Q |
140 |
gaatgaaggtatgccacttgttttcttcctcaaatccaccagctttccgttttaggatgtcacataaaatcaaagagattagaaatagattgaataaggt |
239 |
Q |
| |
|
||||||||||| ||||||| || | |||||| ||| ||| ||||| ||| |||||||| || | |||| ||||| ||||| |||||||| ||||||| |
|
|
| T |
18126234 |
gaatgaaggtacgccacttcttctgttcctccaattcacttgcttttcgtcttaggatggcaaaacaaattaaagatattagggatagattggataaggt |
18126135 |
T |
|
| Q |
240 |
ggcagctgacgggacaaggtttggacttgc |
269 |
Q |
| |
|
||| | || ||||| | |||||||||||| |
|
|
| T |
18126134 |
agcaaccgatgggactaagtttggacttgc |
18126105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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