View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19298_high_16 (Length: 319)
Name: NF19298_high_16
Description: NF19298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19298_high_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 202 - 315
Target Start/End: Complemental strand, 21967094 - 21966981
Alignment:
| Q |
202 |
ttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagt |
301 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
21967094 |
ttggtcccttaattaatttaagtttcattttggtcctttaattaagattcgtccatcgtttatgtcctttccgtcaaacattaattaagaaacgttaagt |
21966995 |
T |
|
| Q |
302 |
ctcacacatggtcg |
315 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
21966994 |
ctcacacatggtcg |
21966981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 202 - 315
Target Start/End: Complemental strand, 21989530 - 21989417
Alignment:
| Q |
202 |
ttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagt |
301 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
21989530 |
ttggtcccttaattaatttaagtttcattttggtcctttaattaagattcgtccatcgtttatgtcctttccgtcaaacattaattaagaaacgttaagt |
21989431 |
T |
|
| Q |
302 |
ctcacacatggtcg |
315 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
21989430 |
ctcacacatggtcg |
21989417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 202 - 315
Target Start/End: Original strand, 21966614 - 21966726
Alignment:
| Q |
202 |
ttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagt |
301 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
21966614 |
ttggtcctttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtcctttccgtcaaacattaattaagaaatg-taagt |
21966712 |
T |
|
| Q |
302 |
ctcacacatggtcg |
315 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
21966713 |
ctcacacatggtcg |
21966726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 202 - 315
Target Start/End: Original strand, 21989050 - 21989162
Alignment:
| Q |
202 |
ttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagt |
301 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
21989050 |
ttggtcctttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtcctttccgtcaaacattaattaagaaatg-taagt |
21989148 |
T |
|
| Q |
302 |
ctcacacatggtcg |
315 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
21989149 |
ctcacacatggtcg |
21989162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 24047237 - 24047127
Alignment:
| Q |
11 |
attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcacc |
108 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| | |||||||||||||| |
|
|
| T |
24047237 |
attatactgttgcaggatcttgagcggaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc |
24047138 |
T |
|
| Q |
109 |
gcatactgctt |
119 |
Q |
| |
|
|||||||||| |
|
|
| T |
24047137 |
acatactgctt |
24047127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 23674961 - 23674851
Alignment:
| Q |
11 |
attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcacc |
108 |
Q |
| |
|
|||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| | |||||||||||||| |
|
|
| T |
23674961 |
attatactgttgcaggatcttgagcgaaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc |
23674862 |
T |
|
| Q |
109 |
gcatactgctt |
119 |
Q |
| |
|
|||||||||| |
|
|
| T |
23674861 |
acatactgctt |
23674851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 23679466 - 23679356
Alignment:
| Q |
11 |
attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcacc |
108 |
Q |
| |
|
|||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| | |||||||||||||| |
|
|
| T |
23679466 |
attatactgttgcaggatcttgagcgaaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc |
23679367 |
T |
|
| Q |
109 |
gcatactgctt |
119 |
Q |
| |
|
|||||||||| |
|
|
| T |
23679366 |
acatactgctt |
23679356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 24051703 - 24051593
Alignment:
| Q |
11 |
attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcacc |
108 |
Q |
| |
|
|||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| | |||||||||||||| |
|
|
| T |
24051703 |
attatactgttgcaggatcttgagcgaaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc |
24051604 |
T |
|
| Q |
109 |
gcatactgctt |
119 |
Q |
| |
|
|||||||||| |
|
|
| T |
24051603 |
acatactgctt |
24051593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 202 - 315
Target Start/End: Complemental strand, 20487315 - 20487202
Alignment:
| Q |
202 |
ttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagt |
301 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| ||||||| |
|
|
| T |
20487315 |
ttggtcccttaattaattttagtctcattttggtcctttaattaagatccgtccatcgtttatgtcctttccgtcaaactttaattaagaaacgttaagt |
20487216 |
T |
|
| Q |
302 |
ctcacacatggtcg |
315 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
20487215 |
ctcacacatggtcg |
20487202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 202 - 313
Target Start/End: Original strand, 20481688 - 20481799
Alignment:
| Q |
202 |
ttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagt |
301 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| | ||||| |
|
|
| T |
20481688 |
ttggtcccttatttaattttagtctcattttggtcctttaattaagattcgtccatcgtttatgtcctttccgtcaaactttaattaagaaacgctaagt |
20481787 |
T |
|
| Q |
302 |
ctcacacatggt |
313 |
Q |
| |
|
|||||||||||| |
|
|
| T |
20481788 |
ctcacacatggt |
20481799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 24859292 - 24859182
Alignment:
| Q |
11 |
attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcacc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
24859292 |
attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc |
24859193 |
T |
|
| Q |
109 |
gcatactgctt |
119 |
Q |
| |
|
||||||||||| |
|
|
| T |
24859192 |
gcatactgctt |
24859182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 202 - 312
Target Start/End: Original strand, 24858989 - 24859099
Alignment:
| Q |
202 |
ttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagt |
301 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||| | |||||||||||| ||| |||| ||| ||| ||| ||||||||||||||||| |
|
|
| T |
24858989 |
ttggtcccttaattatttttaggttcattttggtcctttaattaagctccgtccatcgtttttgttctttccgttaaaaatttattaagaaatgttaagt |
24859088 |
T |
|
| Q |
302 |
ctcacacatgg |
312 |
Q |
| |
|
||||||||||| |
|
|
| T |
24859089 |
ctcacacatgg |
24859099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 202 - 315
Target Start/End: Complemental strand, 24860280 - 24860167
Alignment:
| Q |
202 |
ttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagt |
301 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||| | ||||||||||||||| ||||| ||||||| |||||| |||| ||||||| |
|
|
| T |
24860280 |
ttggtcccttaattatttttagactcattttggtcctttaattaagctccgtccatcgtttatgccctttccgtcaaattttaattttgaaacgttaagt |
24860181 |
T |
|
| Q |
302 |
ctcacacatggtcg |
315 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
24860180 |
ctcacatatggtcg |
24860167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 27205727 - 27205837
Alignment:
| Q |
11 |
attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcacc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
27205727 |
attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc |
27205826 |
T |
|
| Q |
109 |
gcatactgctt |
119 |
Q |
| |
|
|||||||||| |
|
|
| T |
27205827 |
acatactgctt |
27205837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 27210192 - 27210298
Alignment:
| Q |
11 |
attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcacc |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
27210192 |
attatactattgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc |
27210291 |
T |
|
| Q |
109 |
gcatact |
115 |
Q |
| |
|
|||||| |
|
|
| T |
27210292 |
acatact |
27210298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 26897314 - 26897424
Alignment:
| Q |
11 |
attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcacc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
26897314 |
attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc |
26897413 |
T |
|
| Q |
109 |
gcatactgctt |
119 |
Q |
| |
|
|||||||||| |
|
|
| T |
26897414 |
acatactgctt |
26897424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 26901776 - 26901886
Alignment:
| Q |
11 |
attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcacc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
26901776 |
attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc |
26901875 |
T |
|
| Q |
109 |
gcatactgctt |
119 |
Q |
| |
|
|||||||||| |
|
|
| T |
26901876 |
acatactgctt |
26901886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 26406847 - 26406737
Alignment:
| Q |
11 |
attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcacc |
108 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| | |||||||||||||| |
|
|
| T |
26406847 |
attatactgttgcaggatcttgagcggaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc |
26406748 |
T |
|
| Q |
109 |
gcatactgctt |
119 |
Q |
| |
|
|||||||||| |
|
|
| T |
26406747 |
acatactgctt |
26406737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 26411313 - 26411203
Alignment:
| Q |
11 |
attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcacc |
108 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| | |||||||||||||| |
|
|
| T |
26411313 |
attatactgttgcaggatcttgagcggaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc |
26411214 |
T |
|
| Q |
109 |
gcatactgctt |
119 |
Q |
| |
|
|||||||||| |
|
|
| T |
26411213 |
acatactgctt |
26411203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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