View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19298_high_17 (Length: 310)
Name: NF19298_high_17
Description: NF19298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19298_high_17 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 8 - 310
Target Start/End: Original strand, 31708452 - 31708754
Alignment:
| Q |
8 |
caccacagatccaaacatgcacataggtgttgaattattgatattatattgtatgtaatttttatgaactatgttggtgtgacaatggtgtttgtttact |
107 |
Q |
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| T |
31708452 |
caccacagatccaaacatgcacataggtgttgaattattgatattatattgtatgtaatttttatgaactatgttggtgtgacaatggtgtttgtttact |
31708551 |
T |
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| Q |
108 |
taatgctgtttctttgtgagatttcaggtgcaccaagatatgagtttaccattgtcacattattacatattcactggtcataattcatatctaactggaa |
207 |
Q |
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| T |
31708552 |
taatgctgtttctttgtgagatttcaggtgcaccaagatatgagtttaccattgtcacattattacatattcactggtcataattcatatctaactggaa |
31708651 |
T |
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| Q |
208 |
atcagcttagtagtgactgcagtgatgcccccatcatcaaagcacttcagagaggtgttagggtgattgaattggatatatggcctaatgactccaagga |
307 |
Q |
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| T |
31708652 |
atcagcttagtagtgactgcagtgatgcccccatcatcaaagcacttcagagaggtgttagggtgattgaattggatatatggcctaatgactccaagga |
31708751 |
T |
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| Q |
308 |
tga |
310 |
Q |
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||| |
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| T |
31708752 |
tga |
31708754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 310
Target Start/End: Complemental strand, 31012871 - 31012574
Alignment:
| Q |
13 |
cagatccaaacatgcacataggtgttgaattattgatattatattgtatgtaatttttatgaactatgttggtgtgacaatggtgtttgtttacttaatg |
112 |
Q |
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| T |
31012871 |
cagatccaaacatgcacttgagtgttgaattattgaaattatattgtttgtaatttttatgaactatgttggtgagataatgttgtttgtttacttaatg |
31012772 |
T |
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| Q |
113 |
ctgtttctttgtgagatttcaggtgcaccaagatatgagtttaccattgtcacattattacatattcactggtcataattcatatctaactggaaatcag |
212 |
Q |
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| T |
31012771 |
ctgtttctttgtgtgattacaggtgcaccaagatatgagtttaccattgtcacattattacatattcactggtcataattcatatctaactggaaatcag |
31012672 |
T |
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| Q |
213 |
cttagtagtgactgcagtgatgcccccatcatcaaagcacttcagagaggtgttagggtgattgaattggatatatggcctaatgactccaaggatga |
310 |
Q |
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| T |
31012671 |
cttagtagtgactgcagtgatgcccccatcatcgaagcacttcagagaggtgttagagtgattgaattggatatatggcctaacgactctaaggatga |
31012574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 132 - 308
Target Start/End: Original strand, 35550120 - 35550296
Alignment:
| Q |
132 |
caggtgcaccaagatatgagtttaccattgtcacattattacatattcactggtcataattcatatctaactggaaatcagcttagtagtgactgcagtg |
231 |
Q |
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||||||||||| ||||||| || || ||||| ||||||| ||||| |||||||| ||||| |||||||| || |||||||| || || |||||||| | |
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| T |
35550120 |
caggtgcaccatgatatgacattgcccttgtctcattatttcatatatactggtcacaattcctatctaaccgggaatcagctgagcagcgactgcagcg |
35550219 |
T |
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| Q |
232 |
atgcccccatcatcaaagcacttcagagaggtgttagggtgattgaattggatatatggcctaatgactccaaggat |
308 |
Q |
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| T |
35550220 |
acattccaatcgtgaaagcgttgcagagaggtgtaagggtaattgagttggacttatggcctaatgcatccaaggat |
35550296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 35521166 - 35521238
Alignment:
| Q |
162 |
tcacattattacatattcactggtcataattcatatctaactggaaatcagcttagtagtgactgcagtgatg |
234 |
Q |
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| T |
35521166 |
tcacattatttcatatacacaggacacaattcctatctaactggcaatcagctaagcagtgattgcagtgatg |
35521238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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