View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19298_high_7 (Length: 354)

Name: NF19298_high_7
Description: NF19298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19298_high_7
NF19298_high_7
[»] chr2 (4 HSPs)
chr2 (1-321)||(23348413-23348733)
chr2 (1-354)||(12742056-12742411)
chr2 (3-317)||(18354744-18355064)
chr2 (154-354)||(10328425-10328627)
[»] chr7 (3 HSPs)
chr7 (1-317)||(43070819-43071135)
chr7 (1-145)||(1262457-1262601)
chr7 (1-145)||(48849391-48849535)
[»] scaffold0596 (1 HSPs)
scaffold0596 (1-354)||(1022-1375)
[»] chr3 (8 HSPs)
chr3 (1-322)||(53972718-53973039)
chr3 (1-321)||(19881544-19881864)
chr3 (164-322)||(37982939-37983097)
chr3 (1-172)||(37982720-37982891)
chr3 (55-145)||(31685485-31685575)
chr3 (1-44)||(31685446-31685489)
chr3 (78-123)||(17682201-17682246)
chr3 (78-123)||(19766443-19766488)
[»] chr5 (4 HSPs)
chr5 (1-317)||(9044170-9044486)
chr5 (1-354)||(7472883-7473242)
chr5 (1-317)||(30441983-30442299)
chr5 (201-283)||(40163917-40163996)
[»] scaffold0035 (1 HSPs)
scaffold0035 (1-146)||(35429-35574)
[»] chr8 (5 HSPs)
chr8 (1-146)||(14677630-14677775)
chr8 (1-138)||(31100488-31100625)
chr8 (52-138)||(5658175-5658261)
chr8 (1-74)||(33688978-33689052)
chr8 (1-38)||(5658139-5658176)
[»] chr4 (1 HSPs)
chr4 (1-146)||(29862969-29863114)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1-146)||(11242-11387)
[»] chr6 (5 HSPs)
chr6 (52-138)||(33045062-33045148)
chr6 (1-79)||(22000988-22001066)
chr6 (69-146)||(10092908-10092985)
chr6 (1-55)||(10092859-10092913)
chr6 (1-31)||(33045154-33045184)


Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 23348733 - 23348413
Alignment:
Q  1 acctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23348733 acctcactctcagacattcaaacaaaattctctgccgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattc 23348634  T
Q  101 tgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttttcc 200  Q
     ||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23348633 cgacatcaccttcgccgttgtcgtctgcggcatcgtatcagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttttcc 23348534  T
Q  201 ctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgat 300  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23348533 ctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgat 23348434  T
Q  301 tgatactttaaaatcatgtgt 321  Q
    |||||||||||||||||||||    
T  23348433 tgatactttaaaatcatgtgt 23348413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 12742056 - 12742411
Alignment:
Q  1 acctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  12742056 acctcactctcagacattcaaacaaaattctctgccgttgccgctctctccgccgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattc 12742155  T
Q  101 tgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttttcc 200  Q
     ||| ||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12742156 cgacatcaccttcgtcgttgtcgtctgcggcatcgtatcagcaaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttttcc 12742255  T
Q  201 ctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgat 300  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12742256 ctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgat 12742355  T
Q  301 tgatactttaaaatc--atgtgtannnnnnnnncaaacacaccaatatgtccattg 354  Q
    |||||||||||||||  |||||||         |||||||||||||||||||||||    
T  12742356 tgatactttaaaatcatatgtgtatttttttttcaaacacaccaatatgtccattg 12742411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 3 - 317
Target Start/End: Complemental strand, 18355064 - 18354744
Alignment:
Q  3 ctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctg 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  18355064 ctcactctcagacattcaaacaaaattctctgccgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccg 18354965  T
Q  103 acttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatat------cctaaatcgttgttcttgtaactt 196  Q
    || |||||||||  ||||| ||||||||| |||||| || ||||||||||||||||||||||||||||||      ||||||||||||||| |||| |||    
T  18354964 acatcaccttcgctgttgttgtctgcggcgtcgtatcagtcaggtgtgttgaagatgctactatatatatatatatcctaaatcgttgttcctgtagctt 18354865  T
Q  197 ttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaat 296  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18354864 ttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctcttaataaat 18354765  T
Q  297 tgattgatactttaaaatcat 317  Q
    |||||||||||||||||||||    
T  18354764 tgattgatactttaaaatcat 18354744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 154 - 354
Target Start/End: Complemental strand, 10328627 - 10328425
Alignment:
Q  154 aagatgctactatatatat--cctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatg 251  Q
    |||||||||||||||||||  ||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10328627 aagatgctactatatatatatcctaaatcgttgttcatgtatcttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatg 10328528  T
Q  252 atatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcatgtgtannnnnnnnncaaacacaccaatatgtcca 351  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||         ||||||||||||||||||||    
T  10328527 atatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgtatttttttttcaaacacaccaatatgtcca 10328428  T
Q  352 ttg 354  Q
    |||    
T  10328427 ttg 10328425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 43071135 - 43070819
Alignment:
Q  1 acctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43071135 acctcactctcagacattcaaacaaaattctctgccgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattc 43071036  T
Q  101 tgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttttcc 200  Q
     ||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43071035 cgacatcaccttcgccgttgtcgtctgcggcatcgtatcagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttttcc 43070936  T
Q  201 ctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgat 300  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43070935 ctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctcttaataaattgat 43070836  T
Q  301 tgatactttaaaatcat 317  Q
    |||||||||||||||||    
T  43070835 tgatactttaaaatcat 43070819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 1262457 - 1262601
Alignment:
Q  1 acctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1262457 acctcactctcagacattcaaacaaaattctctgccgttgccgctttctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattc 1262556  T
Q  101 tgacttcaccttcgacgttgtcgtctgcggcatcgtattagccag 145  Q
     ||| ||||||||| ||||||||| ||||||||||||| ||||||    
T  1262557 cgacatcaccttcgccgttgtcgtatgcggcatcgtatcagccag 1262601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 48849535 - 48849391
Alignment:
Q  1 acctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  48849535 acctcactctcagacattcaaacaaaattctctgccgttgccgctttctccgtcgccgcagctctctcctttcgtcgcccttcaccaatgctctcgattc 48849436  T
Q  101 tgacttcaccttcgacgttgtcgtctgcggcatcgtattagccag 145  Q
     ||| ||||||||| ||||||||||||||||||||||| ||||||    
T  48849435 cgacatcaccttcgccgttgtcgtctgcggcatcgtatcagccag 48849391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 1022 - 1375
Alignment:
Q  1 acctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattc 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1022 acctcactctcagacatttaaacaaaattctctgccgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattc 1121  T
Q  101 tgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttttcc 200  Q
     ||| |||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1122 cgacatcactttcgccgttgtcgtctgcggcatcgtatcagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttttcc 1221  T
Q  201 ctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgat 300  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1222 ctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgat 1321  T
Q  301 tgatactttaaaatcatgtgtannnnnnnnncaaacacaccaatatgtccattg 354  Q
    ||||| ||||||||||||||||         |||||||||||||||||||||||    
T  1322 tgatattttaaaatcatgtgtatttttttttcaaacacaccaatatgtccattg 1375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 53973039 - 53972718
Alignment:
Q  1 acctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattc 100  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  53973039 acctcactctcagacatttaaacaaaattctctgtcgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattc 53972940  T
Q  101 tgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttttcc 200  Q
     ||| |||| |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  53972939 cgacatcactttcgtcgttgtcgtctgcggcatcgtatcagccaagtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttttcc 53972840  T
Q  201 ctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgat 300  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  53972839 ctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgat 53972740  T
Q  301 tgatactttaaaatcatgtgta 322  Q
    ||||||||||||||||||||||    
T  53972739 tgatactttaaaatcatgtgta 53972718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 19881864 - 19881544
Alignment:
Q  1 acctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattc 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||| || |||||||||||||||||||||||    
T  19881864 acctcactctcagacattcaaacaaaattctctgtcgttgccgctctctccgtcaccgcagctctctcctgtcctcacccttcaccaatgctctcgattc 19881765  T
Q  101 tgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttttcc 200  Q
     ||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  19881764 cgacatcaccttcgccgttgtcgtctgcggcatcgtatcagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttttcc 19881665  T
Q  201 ctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgat 300  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19881664 ctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgat 19881565  T
Q  301 tgatactttaaaatcatgtgt 321  Q
    |||||||||||||||||||||    
T  19881564 tgatactttaaaatcatgtgt 19881544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 164 - 322
Target Start/End: Original strand, 37982939 - 37983097
Alignment:
Q  164 tatatatatcctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatag 263  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37982939 tatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatag 37983038  T
Q  264 attttaccatcatgtattatgctattaataaattgattgatactttaaaatcatgtgta 322  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37983039 attttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgta 37983097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 37982720 - 37982891
Alignment:
Q  1 acctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattc 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37982720 acctcactctcagacattcaaacaaaattctctgtcgttgccgctctctccgtcgccgcagctctctcctatcgtcgcccttcaccaatgctctcgattc 37982819  T
Q  101 tgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatat 172  Q
     ||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  37982820 cgacatcaccttcgtcgttgtcgtctgcggcatcgtatcagccaggtgtgttgaagatgctaatatatatat 37982891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 55 - 145
Target Start/End: Original strand, 31685485 - 31685575
Alignment:
Q  55 gccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccag 145  Q
    |||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||| ||||||||||||||||||||||| ||||||    
T  31685485 gccgcagctctctcctgtcgtcgcccttcaccaatgatatcgattccgacatcaccttcgccgttgtcgtctgcggcatcgtatcagccag 31685575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 31685446 - 31685489
Alignment:
Q  1 acctcactctcagacattcaaacaaaattctctgccgttgccgc 44  Q
    ||||||||||||||||||||||||||||| | ||||||||||||    
T  31685446 acctcactctcagacattcaaacaaaattatatgccgttgccgc 31685489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 17682201 - 17682246
Alignment:
Q  78 cccttcaccaatgctctcgattctgacttcaccttcgacgttgtcg 123  Q
    ||||||||||||||||||||||| ||| ||||||| | ||||||||    
T  17682201 cccttcaccaatgctctcgattccgacatcacctttgccgttgtcg 17682246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 19766443 - 19766488
Alignment:
Q  78 cccttcaccaatgctctcgattctgacttcaccttcgacgttgtcg 123  Q
    ||||||||||||||||| ||||| ||| ||||||||| ||||||||    
T  19766443 cccttcaccaatgctctagattccgacatcaccttcgccgttgtcg 19766488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 9044170 - 9044486
Alignment:
Q  1 acctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  9044170 acctcactctcagacattcaaacaaaattctctgccgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattt 9044269  T
Q  101 tgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttttcc 200  Q
     ||| ||||||||| ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9044270 cgacatcaccttcgtcgttgtcgtctgcagcatcgtatcagccaagtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttttcc 9044369  T
Q  201 ctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgat 300  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9044370 ctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgat 9044469  T
Q  301 tgatactttaaaatcat 317  Q
    |||||||||||||||||    
T  9044470 tgatactttaaaatcat 9044486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 7473242 - 7472883
Alignment:
Q  1 acctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattc 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7473242 acctcactctcagacattcaaacaaaattctctgccgttgtcgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattc 7473143  T
Q  101 tgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatat----atatcctaaatcgttgttcttgtaactt 196  Q
     ||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    ||||||||||||||||||| ||||||||    
T  7473142 cgacatcaccttcgccgttgtcgtctgcggcatcgtatcagccaggtgtgttgaagatgctactatatatatatatcctaaatcgttgttcctgtaactt 7473043  T
Q  197 ttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaat 296  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7473042 ttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaat 7472943  T
Q  297 tgattgatactttaaaatc--atgtgtannnnnnnnncaaacacaccaatatgtccattg 354  Q
    |||||||||||||||||||  |||||||         |||||||||||||||||||||||    
T  7472942 tgattgatactttaaaatcatatgtgtatttttttttcaaacacaccaatatgtccattg 7472883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 30442299 - 30441983
Alignment:
Q  1 acctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattc 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  30442299 acctcactctcagacattcaaacaaaattctctgtcgttgccgctctctccgttgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattc 30442200  T
Q  101 tgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttttcc 200  Q
     ||| ||||||| | ||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30442199 cgacatcaccttggccgttgtcgtctgcggcatcgtatcagccatatgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttttcc 30442100  T
Q  201 ctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgat 300  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  30442099 ctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgat 30442000  T
Q  301 tgatactttaaaatcat 317  Q
    |||||||||||||||||    
T  30441999 tgatactttaaaatcat 30441983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 283
Target Start/End: Original strand, 40163917 - 40163996
Alignment:
Q  201 ctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattat 283  Q
    ||||||||||||||||||||||| ||| ||||||||| | ||||||   ||||||||| ||||||||||| || |||||||||    
T  40163917 ctaactttgttattccattatatatttagtttgtttggatgtgaat---tgatatttacatagattttacaattatgtattat 40163996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 35429 - 35574
Alignment:
Q  1 acctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| || ||| |||||||||||||    
T  35429 acctcactctcagacattcaaacaaaattctctgccgttgctgctctctccgtcgccgcagctctctcctgtcgtcgcctttgaccgatgctctcgattc 35528  T
Q  101 tgacttcaccttcgacgttgtcgtctgcggcatcgtattagccagg 146  Q
    |||| ||||||||| ||||||||| ||||||||||||| |||||||    
T  35529 tgacatcaccttcgccgttgtcgtttgcggcatcgtatcagccagg 35574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 14677775 - 14677630
Alignment:
Q  1 acctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattc 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  14677775 acctcactctcagacattcaaacaaaatcctctgccgttgccgctctctccgtcgccgcagctctctcctatcgtcacccttcaccaatgctctcgattc 14677676  T
Q  101 tgacttcaccttcgacgttgtcgtctgcggcatcgtattagccagg 146  Q
     ||| ||||||||| ||||||||||||| ||||||||| |||||||    
T  14677675 cgacatcaccttcgccgttgtcgtctgcagcatcgtatcagccagg 14677630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 31100625 - 31100488
Alignment:
Q  1 acctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattc 100  Q
    ||||||||||||||||||||||||||||||| |||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31100625 acctcactctcagacattcaaacaaaattctttgccgtcgccactctctccgtcgccgcaactctctcctgtcgtcgcccttcaccaatgctctcgattc 31100526  T
Q  101 tgacttcaccttcgacgttgtcgtctgcggcatcgtat 138  Q
      || ||||||||| |||||||||||| ||||||||||    
T  31100525 caacatcaccttcgccgttgtcgtctgtggcatcgtat 31100488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 5658175 - 5658261
Alignment:
Q  52 gtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtat 138  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||  || ||||||||| |||||||||||| ||||||||||    
T  5658175 gtcgccgcagctctctcctgtcgtcgcccttcaccaatgctcttgattccaacatcaccttcgccgttgtcgtctgtggcatcgtat 5658261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 33689052 - 33688978
Alignment:
Q  1 acctcactctcagacattcaaacaaaa-ttctctgccgttgccgctctctctgtcgccgcagctctctcctgtcg 74  Q
    |||||||||| |||||||||||||| | |||||| || | ||||||||||| ||||||||||||||||| |||||    
T  33689052 acctcactcttagacattcaaacaagacttctctcccatcgccgctctctccgtcgccgcagctctctcatgtcg 33688978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5658139 - 5658176
Alignment:
Q  1 acctcactctcagacattcaaacaaaattctctgccgt 38  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  5658139 acctcactctcagacattcaaacaaaattctttgccgt 5658176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 29863114 - 29862969
Alignment:
Q  1 acctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattc 100  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29863114 acctcactctcagacattcaaacaaaattctctgtcgctgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccgatgctctcgattc 29863015  T
Q  101 tgacttcaccttcgacgttgtcgtctgcggcatcgtattagccagg 146  Q
     ||| |||| || | ||||||| ||||||||||||||| |||||||    
T  29863014 cgacatcacttttgccgttgtcatctgcggcatcgtatcagccagg 29862969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 11387 - 11242
Alignment:
Q  1 acctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattc 100  Q
    ||||||||| ||||||||||||||||||||| ||  ||  |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  11387 acctcactcccagacattcaaacaaaattctttgttgtcaccgctctctccgtcgccgcagctctctcttgtcgtcgcccttcaccaatgctctcgaatc 11288  T
Q  101 tgacttcaccttcgacgttgtcgtctgcggcatcgtattagccagg 146  Q
     ||| ||||||||| |||||||||||||||||| | || |||||||    
T  11287 cgacatcaccttcgccgttgtcgtctgcggcattgcatcagccagg 11242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 52 - 138
Target Start/End: Complemental strand, 33045148 - 33045062
Alignment:
Q  52 gtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtat 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||| |||||||||||||||||||||||    
T  33045148 gtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccaacatcaccttcgtcgttgtcgtctgcggcatcgtat 33045062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 22001066 - 22000988
Alignment:
Q  1 acctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcc 79  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  22001066 acctcactttcagacattcaaacaaaattctctgtcgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcc 22000988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 10092908 - 10092985
Alignment:
Q  69 ctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccagg 146  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||    
T  10092908 ctgtcgtcgcccttcaccaatgctctcgattccgacatcaccttcgtcgttgtcgtctgcggcatcgtatcagccagg 10092985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 10092859 - 10092913
Alignment:
Q  1 acctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcg 55  Q
    |||||||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  10092859 acctcactctcagacattcaaacaaaattctctaacgtcgccgctctctctgtcg 10092913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 33045184 - 33045154
Alignment:
Q  1 acctcactctcagacattcaaacaaaattct 31  Q
    |||||||||||||||||||||||||||||||    
T  33045184 acctcactctcagacattcaaacaaaattct 33045154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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