View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19299_high_1 (Length: 605)

Name: NF19299_high_1
Description: NF19299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19299_high_1
NF19299_high_1
[»] chr2 (1 HSPs)
chr2 (17-500)||(26376912-26377398)
[»] scaffold1211 (1 HSPs)
scaffold1211 (35-294)||(891-1152)
[»] chr3 (2 HSPs)
chr3 (426-501)||(50063925-50064000)
chr3 (434-494)||(7227152-7227212)
[»] chr1 (2 HSPs)
chr1 (426-496)||(33966650-33966720)
chr1 (426-494)||(50204531-50204599)
[»] chr6 (2 HSPs)
chr6 (426-501)||(25101044-25101119)
chr6 (426-463)||(23890001-23890038)
[»] chr5 (1 HSPs)
chr5 (434-494)||(43281148-43281208)
[»] chr8 (1 HSPs)
chr8 (440-496)||(29168556-29168612)
[»] chr7 (1 HSPs)
chr7 (434-494)||(46082492-46082552)


Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 17 - 500
Target Start/End: Original strand, 26376912 - 26377398
Alignment:
Q  17 atttcatttatcactttctttt-ctcttctgctttgttattctgttccgctccagaacttgaataacatccaacacacctcgtacctcctgaaaatatta 115  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26376912 atttcatttatcgctttctttttctcttctgctttgttattctgttccgctccagaacttgaataacatccaacacacctcgtacctcctgaaaatatta 26377011  T
Q  116 taaagtagaaaacctacaaatatggacact--gtcccaatttgctgtggtatagttaagcaactatgaaaggtgcagcatatgcttatgggttgtattgt 213  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26377012 taaagtagaaaacctacaaatatggacactatgtcccaatttgctgtggtatagttaagcaactatgaaaggtgcagcatatgcttatgggttgtattgt 26377111  T
Q  214 actcgaaagttcgttcaacttattgattgtagagactagatgttagaatagaaaatccgacttgaaagaatgtagataaatgaatgcacaagaacaaaat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26377112 actcgaaagttcgttcaacttattgattgtagagactagatgttagaatagaaaatccgacttgaaagaatgtagataaatgaatgcacaagaacaaaat 26377211  T
Q  314 gattggttgtcaattgtacacgtctcagacgacacatgggctatagtagnnnnnnnnaatgcaattcttagactagagtaaaaagatttgttttgggttt 413  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||    
T  26377212 gattggttgtcaactgtacacgtctctgacgacacatgggctatagtagttttttttaatgcaattcttagactagagtaaaaagatttgttttgggttt 26377311  T
Q  414 ctaatagtaggaaggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgacttcattcc 500  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26377312 ctaatagtaggaaggatcgagtgctggctcgtaggatcttacgattctacgtgccacggcacctccaccgtgcttcgacttcattcc 26377398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1211 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold1211
Description:

Target: scaffold1211; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 35 - 294
Target Start/End: Original strand, 891 - 1152
Alignment:
Q  35 ttttctcttctgctttgttattctgttccgctccagaacttgaataacatccaacacacctcgtacctcctgaaaatattataaagtagaaaacctacaa 134  Q
    ||||||||||| |||||||||||||||| | ||||||||||| |||||||  ||  ||||  ||||||||||||||||||||||||| ||| ||||||||    
T  891 ttttctcttctactttgttattctgttctgttccagaacttgcataacatttaatccacccagtacctcctgaaaatattataaagttgaatacctacaa 990  T
Q  135 atatggacact---gtcccaatttgctgtggtatagttaagcaactatgaaaggtgcagcatatgcttatgggttgtattgtactcgaaagttcgttcaa 231  Q
    |||||||||||   ||||||||  ||||  ||||||||| ||||| ||||||||| |  |||||||||| || |||||||||| | |||||||  || ||    
T  991 atatggacacttatgtcccaatg-gctgcagtatagttatgcaaccatgaaaggttccacatatgcttacggtttgtattgtatttgaaagtttcttaaa 1089  T
Q  232 cttattgattgtagagactagatgttagaatagaaaatccgacttgaaagaatgtagataaat 294  Q
    ||||||||| ||||||||||||| ||||| ||| ||||| ||||  ||||| ||| |||||||    
T  1090 cttattgatggtagagactagattttagactagcaaatctgactgcaaagactgttgataaat 1152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 426 - 501
Target Start/End: Original strand, 50063925 - 50064000
Alignment:
Q  426 aggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgacttcattccg 501  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||| ||||    
T  50063925 aggatcgagtgctggctcgtaggatcttacgattctacgtgccacggcacctcaaccgagcttcgacttcactccg 50064000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 494
Target Start/End: Original strand, 7227152 - 7227212
Alignment:
Q  434 gtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgactt 494  Q
    |||||||||| ||||||  ||||||||||| | |||| ||||||| ||| |||||||||||    
T  7227152 gtgctggctcttaggattgtacgattctacgtcccacagcacctcgaccatgcttcgactt 7227212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 426 - 496
Target Start/End: Original strand, 33966650 - 33966720
Alignment:
Q  426 aggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgacttca 496  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||    
T  33966650 aggatcgagtgctggctcgtaggatcttacgattctacgtgccacggcacctcaaccgtgctttgacttca 33966720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 494
Target Start/End: Original strand, 50204531 - 50204599
Alignment:
Q  426 aggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgactt 494  Q
    ||||||| ||||||| |||||||||| || ||| |||| | |||| ||||||| | |||||||||||||    
T  50204531 aggatcgagtgctggttcgtaggatcgtatgatcctacgttccacagcacctcaatcgtgcttcgactt 50204599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 426 - 501
Target Start/End: Complemental strand, 25101119 - 25101044
Alignment:
Q  426 aggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgacttcattccg 501  Q
    ||||||| |||||||||||||||||||||||||||||  | |||||||||||| ||||||||||||||||| ||||    
T  25101119 aggatcgagtgctggctcgtaggatcttacgattctatgtcccacggcacctcaaccgtgcttcgacttcactccg 25101044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 463
Target Start/End: Complemental strand, 23890038 - 23890001
Alignment:
Q  426 aggatcgtgtgctggctcgtaggatcttacgattctac 463  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  23890038 aggatcgagtgctggctcgtaggatcgtacgattctac 23890001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 494
Target Start/End: Complemental strand, 43281208 - 43281148
Alignment:
Q  434 gtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgactt 494  Q
    ||||||| || ||||||| ||||||||||||| |||||||||||| | | |||||||||||    
T  43281208 gtgctggttcataggatcgtacgattctacatcccacggcacctcaatcatgcttcgactt 43281148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 496
Target Start/End: Complemental strand, 29168612 - 29168556
Alignment:
Q  440 gctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgacttca 496  Q
    ||||||||||||  |||||  ||| |||||| ||||||| |||||||||||||||||    
T  29168612 gctcgtaggatcacacgatcttacgtgccacagcacctcgaccgtgcttcgacttca 29168556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 494
Target Start/End: Complemental strand, 46082552 - 46082492
Alignment:
Q  434 gtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgactt 494  Q
    |||||||||| ||||||| ||||||||||  | || | ||||||| |||||||||||||||    
T  46082552 gtgctggctcataggatcgtacgattctatgtccctccgcacctcaaccgtgcttcgactt 46082492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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