View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19299_high_10 (Length: 347)

Name: NF19299_high_10
Description: NF19299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19299_high_10
NF19299_high_10
[»] chr6 (4 HSPs)
chr6 (113-340)||(22470651-22470876)
chr6 (123-337)||(22426966-22427177)
chr6 (113-218)||(31986526-31986631)
chr6 (113-211)||(31983892-31983989)


Alignment Details
Target: chr6 (Bit Score: 176; Significance: 9e-95; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 113 - 340
Target Start/End: Complemental strand, 22470876 - 22470651
Alignment:
Q  113 acttatttctgccttttcaacaataaattgagagagaaggatgatgaaagcataaagaaacacgaggtattgagccatatttttcctacattgcatgtaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22470876 acttatttctgccttttcaacaataaattgagagagaaggatgatcaaagcataaagaaacacgaggtattgagccatatttttcctacattgcatgtaa 22470777  T
Q  213 taaagannnnnnnnnatcattttataagtaaggtttcatgctctctaagcttcaattaaataattttgaacacttaaaaggttgcgaaacatcatttaaa 312  Q
    ||||||         |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22470776 taaaga-ttttttttatcattttataagtaaggtttcatgctctctaagattcaattaaataattttgaacactt-aaaggttgcgaaacatcatttaaa 22470679  T
Q  313 aagtagtaatttattgtatatgtctgtg 340  Q
    |||||||||||||||||||||| |||||    
T  22470678 aagtagtaatttattgtatatgcctgtg 22470651  T

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Target: chr6; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 123 - 337
Target Start/End: Complemental strand, 22427177 - 22426966
Alignment:
Q  123 gccttttcaacaataaattgagagagaaggatgatgaaagcataaagaaacacgaggtattgagccatatttttcctacattgcatgtaataaagannnn 222  Q
    ||||||| ||||| |||| |||| |||| ||||||||||||||||||||||| ||| |||||| |||||||||||||  |||||||||||||||||        
T  22427177 gccttttgaacaacaaatagagatagaaagatgatgaaagcataaagaaacatgagatattgaaccatatttttcctcaattgcatgtaataaaga---a 22427081  T
Q  223 nnnnnatcattttataagt-aaggtttcatgctctctaagcttcaattaaataattttgaacacttaaaaggttgcgaaacatcatttaaaaagtagtaa 321  Q
         |||||||||  ||| || ||||| |||| | || ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||    
T  22427080 tatttatcattttagtagtaaaagtttcctgctatgtacgcttcaattaaataattttgaacacttaaaa-gttgtgaaacatcatttaaaaactagtaa 22426982  T
Q  322 tttattgtatatgtct 337  Q
    || ||| |||||||||    
T  22426981 ttgattttatatgtct 22426966  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 113 - 218
Target Start/End: Original strand, 31986526 - 31986631
Alignment:
Q  113 acttatttctgccttttcaacaataaattgagagagaaggatgatgaaagcataaagaaacacgaggtattgagccatatttttcctacattgcatgtaa 212  Q
    ||||||||| ||||||||||||| ||||  ||| ||||||||||| ||| |||||| ||||| ||| |||||| ||||||||||||| | ||||||||||    
T  31986526 acttatttccgccttttcaacaagaaatatagaaagaaggatgatcaaaacataaacaaacatgagatattgaaccatatttttcctcctttgcatgtaa 31986625  T
Q  213 taaaga 218  Q
    ||||||    
T  31986626 taaaga 31986631  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 31983892 - 31983989
Alignment:
Q  113 acttatttctgccttttcaacaataaattgagagagaaggatgatgaaagcataaagaaacacgaggtattgagccatatttttcctacattgcatgta 211  Q
    ||||||||| ||||||| ||||| ||| ||||| ||||||||||| ||| || ||| ||||| ||| ||||||||||| |||||||| | |||||||||    
T  31983892 acttatttccgcctttttaacaagaaactgagaaagaaggatgatcaaaacaaaaacaaacatgagatattgagccat-tttttcctcctttgcatgta 31983989  T

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