View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19299_high_16 (Length: 245)
Name: NF19299_high_16
Description: NF19299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19299_high_16 |
 | |
|
| [»] scaffold0117 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 2126986 - 2126768
Alignment:
| Q |
14 |
tcatcaacggacctcccatgaagtttcatgtctatgaaactctcattcaagatatatagaatttgatcattcacaacaatacttctatcgtgcacaccct |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2126986 |
tcatcaacggacctcccatgaagtttcatgtctatgaaactctcatttaagatatatagaatttgatcattcacaacaatacttctatcgtgcgcaccct |
2126887 |
T |
|
| Q |
114 |
tcgtgaaggaaataattgcactgattttctagcaaagatgagagctgtttcggattttgtgatgactaatcatacttctcctcctgaagagttgttaccg |
213 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||| ||| || | |||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2126886 |
tcgtgagggaaataattgcactgattttctagcaaagatgggagctgcttcagactctgtgataactaatcatgtttctcctcctgaagagttgttaccg |
2126787 |
T |
|
| Q |
214 |
cttattagggatgatgctt |
232 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
2126786 |
cttattagagatgatgctt |
2126768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 55416594 - 55416543
Alignment:
| Q |
14 |
tcatcaacggacctcccatgaagtttcatgtctatgaaactctcattcaaga |
65 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
55416594 |
tcatcaacggccctaccatgaagtttcatgtctatgccactctcattcaaga |
55416543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 32106051 - 32105831
Alignment:
| Q |
14 |
tcatcaacggacctcccatgaagtttcatgtctatgaaactctcattcaagatatatagaatttgatcattcacaacaatacttctatcgtgcacaccct |
113 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||| ||| |
|
|
| T |
32106051 |
tcatcaactgacctcccatgaagtttcatgtctatgccactctcattcaagatataaagtatttgatcattcacatcaatacttctatcttgcacatcct |
32105952 |
T |
|
| Q |
114 |
tcgtgaaggaaataattgcactgattttctagcaaagatgagagctgtttcggattttgtgatgactaatcatacttctcctcctgaagagttgttaccg |
213 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| |||||||| ||||| ||| || | |||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
32105951 |
tcgtgagggaaataattgcgctgattttctaacaaagatgggagctacttcagactatgtgatgactaatcatgcttctcctcctgaaggactgttaccg |
32105852 |
T |
|
| Q |
214 |
cttattagggatgatgcttgt |
234 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32105851 |
cttattagggatgatgcttgt |
32105831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 26241674 - 26241459
Alignment:
| Q |
16 |
atcaacggacctcccatgaagtttcatgtctatgaaactctcattcaagatatatagaatttgatcattcacaacaatacttctatcgtgcacacccttc |
115 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
26241674 |
atcaacggacctcccatgaagtgtcatgtctatgccactctcattcaagatataaaggatttgatcattcacagcaatacttctatcttgcacacccttc |
26241575 |
T |
|
| Q |
116 |
gtgaaggaaataattgcactgattttctagcaaagatgagagctgtttcggattttgtgatgactaatcatacttctcctcctgaagagttgttaccgct |
215 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||| ||| || ||| || | |||||| ||||||| ||||||||||||| | |||||||| ||| |
|
|
| T |
26241574 |
gtgagggaaataattgtgctgattttctagcaaagatgggagttgcttcaga--ctctgatgattaatcatgcttctcctcctgaggggttgttactgct |
26241477 |
T |
|
| Q |
216 |
tattagggatgatgcttg |
233 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
26241476 |
tattaggggtgatgcttg |
26241459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 26966 - 27017
Alignment:
| Q |
14 |
tcatcaacggacctcccatgaagtttcatgtctatgaaactctcattcaaga |
65 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26966 |
tcatcaatggaccttccatgaagtttcatgtctatgccactctcattcaaga |
27017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 40924391 - 40924442
Alignment:
| Q |
14 |
tcatcaacggacctcccatgaagtttcatgtctatgaaactctcattcaaga |
65 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40924391 |
tcatcaacggcccttccatgaagtttcatgtctatgccactctcattcaaga |
40924442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 31727688 - 31727637
Alignment:
| Q |
14 |
tcatcaacggacctcccatgaagtttcatgtctatgaaactctcattcaaga |
65 |
Q |
| |
|
|||||||| | ||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31727688 |
tcatcaacagcccttccatgaagtttcatgtctatgccactctcattcaaga |
31727637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University