View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19299_high_2 (Length: 580)
Name: NF19299_high_2
Description: NF19299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19299_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 36 - 328
Target Start/End: Complemental strand, 29041452 - 29041160
Alignment:
| Q |
36 |
gacatcatcataaataaaataaggagaaaacgttgcacatggaggtgtgtcacttggtgacttaaccatggactcaaccataaattccctccatatacca |
135 |
Q |
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| T |
29041452 |
gacatcatcataaataaaataaggagaaaacattgcacatggaggtgtgtcacttggtgacttaaccatggactcaaccataaattccctccatatacca |
29041353 |
T |
|
| Q |
136 |
tccattgaacatgccacattttcagtacaaacctcaatagcttctgcaggtatttttggttcaaatcttatgagatttgcatattcagtcaatagatgta |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29041352 |
tccattgaacatgccacattttcagtacaaacctcaatagcttctgcaggtatttttggttcaaatcttatgagatttgcatattcagtcaatagatgta |
29041253 |
T |
|
| Q |
236 |
acatataatcatacaccaatttcatatttacgttctcttcaacgaaccttgtaccttctctgccaatctcttgtgcctgttgaattatgcatt |
328 |
Q |
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| T |
29041252 |
acatataatcatacaccaatttcatatttacgttctcttcaacgaaccttgtaccttctctgccaatctcttgtgcctgttgaattatgcatt |
29041160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 344 - 565
Target Start/End: Complemental strand, 29019164 - 29018943
Alignment:
| Q |
344 |
caaagaaatggagaattgcgagttcgaactcacgtcacaacatatcaaatttctctccaatcttttatcatttgagctttacttatagacatatattgac |
443 |
Q |
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||||||||| ||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
29019164 |
caaagaaatagagaattgcgaattcgaacttacgtcacaacatatcaaatgtctctccaatcttttatcatttgaactttacttatagacatgtattgac |
29019065 |
T |
|
| Q |
444 |
attttatatgagaaaatattatagtattaggggaaggaatatagggattaccttccctggatgagtattgccccaatctacagcatacttaatatcttga |
543 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29019064 |
attttatatgagaaaatattatagtattaggggaaggaatatagggattaccttccctggatgagtattgccccaatcaacagcatacttaatatcttga |
29018965 |
T |
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| Q |
544 |
cacatgttttgcttgttgatgg |
565 |
Q |
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|||||||||||||||||||||| |
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| T |
29018964 |
cacatgttttgcttgttgatgg |
29018943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 52 - 324
Target Start/End: Complemental strand, 29019743 - 29019471
Alignment:
| Q |
52 |
aaataaggagaaaacgttgcacatggaggtgtgtcacttggtgacttaaccatggactcaaccataaattccctccatataccatccattgaacatgcca |
151 |
Q |
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||||||||||||||| | | ||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||| |
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| T |
29019743 |
aaataaggagaaaacatagtacatggaagtgtatcacttggtgacttaaccatggactcaaccataaactccctccatataccacccattggacatgcca |
29019644 |
T |
|
| Q |
152 |
cattttcagtacaaacctcaatagcttctgcaggtatttttggttcaaatcttatgagatttgcatattcagtcaatagatgtaacatataatcatacac |
251 |
Q |
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||||||| ||||||||||| ||| |||||||||| ||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29019643 |
agttttcagaacaaacctcaactgctcctgcaggtatggttgcttcaaatctcatgagctttgcatattcagtcaatagatgtaacatataatcatacac |
29019544 |
T |
|
| Q |
252 |
caatttcatatttacgttctcttcaacgaaccttgtaccttctctgccaatctcttgtgcctgttgaattatg |
324 |
Q |
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| T |
29019543 |
caatttcatatttacgttctcttctatgaatcttgtcccttctctgccaatctcttctgcctgttgaattatg |
29019471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 364 - 565
Target Start/End: Complemental strand, 29040505 - 29040302
Alignment:
| Q |
364 |
agttcgaactcacgtcacaacatatcaaatttctctccaatcttttatcatttgagctttacttat-agacatatattgacattttatatgagaaaatat |
462 |
Q |
| |
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||||| |||||| ||| || ||||||||| | | |||||||||||||| ||||| || ||||| | || |||||||||| |||||||| || || || |
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| T |
29040505 |
agttcaaactcaagtcccagaatatcaaatgtttatccaatcttttatcgtttgaactatacttctgaggcatatattgagattttataacagcaattac |
29040406 |
T |
|
| Q |
463 |
tatagtattaggggaa-ggaatatagggattaccttccctggatgagtattgccccaatctacagcatacttaatatcttgacacatgttttgcttgttg |
561 |
Q |
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|||||||||| ||||| |||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29040405 |
tatagtattacgggaaaggaatatagggattaccttctctggatgtgtattgccccaatcaacagcatacttaatatcttgacacatgttttgcttgttg |
29040306 |
T |
|
| Q |
562 |
atgg |
565 |
Q |
| |
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|||| |
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| T |
29040305 |
atgg |
29040302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 430
Target Start/End: Complemental strand, 26919928 - 26919846
Alignment:
| Q |
349 |
aaatggagaattgcgagttcgaactcacgtcacaacatatcaaatttctctccaa-tcttttatcatttgagctttacttata |
430 |
Q |
| |
|
||||||||||||| |||||| |||||||| ||||||||||||| ||| | ||| | |||||||||||||| | |||||||| |
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| T |
26919928 |
aaatggagaattgtgagttcatcctcacgtcccaacatatcaaatatctttacaatttttttatcatttgagttatacttata |
26919846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 428
Target Start/End: Original strand, 39992176 - 39992223
Alignment:
| Q |
381 |
caacatatcaaatttctctccaatcttttatcatttgagctttactta |
428 |
Q |
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||||||||||||||||||| |||| ||||||||||||| |||||||| |
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| T |
39992176 |
caacatatcaaatttctctgcaattctttatcatttgagttttactta |
39992223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 419
Target Start/End: Complemental strand, 15091360 - 15091290
Alignment:
| Q |
349 |
aaatggagaattgcgagttcgaactcacgtcacaacatatcaaatttctctccaatcttttatcatttgag |
419 |
Q |
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||||||||||||| |||||| |||||||| | ||||||||||||| ||| | |||| ||||| ||| |||| |
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| T |
15091360 |
aaatggagaattgtgagttcaaactcacgccccaacatatcaaatgtctttgcaatattttaccatctgag |
15091290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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