View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19299_high_21 (Length: 207)
Name: NF19299_high_21
Description: NF19299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19299_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 77; Significance: 6e-36; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 22470876 - 22470796
Alignment:
| Q |
114 |
acttatttctgccttttcaacaataaattgagagagaaggatgatgaaagcataaagaaacacgaggtattgagccatatt |
194 |
Q |
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| T |
22470876 |
acttatttctgccttttcaacaataaattgagagagaaggatgatcaaagcataaagaaacacgaggtattgagccatatt |
22470796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 22427177 - 22427107
Alignment:
| Q |
124 |
gccttttcaacaataaattgagagagaaggatgatgaaagcataaagaaacacgaggtattgagccatatt |
194 |
Q |
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| T |
22427177 |
gccttttgaacaacaaatagagatagaaagatgatgaaagcataaagaaacatgagatattgaaccatatt |
22427107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 31986526 - 31986606
Alignment:
| Q |
114 |
acttatttctgccttttcaacaataaattgagagagaaggatgatgaaagcataaagaaacacgaggtattgagccatatt |
194 |
Q |
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||||||||| ||||||||||||| |||| ||| ||||||||||| ||| |||||| ||||| ||| |||||| ||||||| |
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| T |
31986526 |
acttatttccgccttttcaacaagaaatatagaaagaaggatgatcaaaacataaacaaacatgagatattgaaccatatt |
31986606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 31983892 - 31983969
Alignment:
| Q |
114 |
acttatttctgccttttcaacaataaattgagagagaaggatgatgaaagcataaagaaacacgaggtattgagccat |
191 |
Q |
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||||||||| ||||||| ||||| ||| ||||| ||||||||||| ||| || ||| ||||| ||| ||||||||||| |
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| T |
31983892 |
acttatttccgcctttttaacaagaaactgagaaagaaggatgatcaaaacaaaaacaaacatgagatattgagccat |
31983969 |
T |
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