View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19299_high_3 (Length: 510)
Name: NF19299_high_3
Description: NF19299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19299_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 10 - 294
Target Start/End: Original strand, 36123629 - 36123912
Alignment:
| Q |
10 |
attattctagatatatcatcccctaaaaaataaattattttagagaagaccaatgttatagaagtatcattctcaccaataacaagagaaaacattgtgt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36123629 |
attattctagatatatcatcccctaaaaaataaattattttagagaagaccaatgttatagaagtatcattctcaccaataacaagagaaaacattgtgt |
36123728 |
T |
|
| Q |
110 |
aacgaggccactcccaaaatataataataacaactatattgaacaaaatcatatcattggaaattaagtccaaacattcttaagccggcctaaccagctc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36123729 |
aacgaggccactcccaaaatataataataacaactatattgaacaaaatcatatcattggaaattaagtccaaacattcttaagccggcctaaccagctc |
36123828 |
T |
|
| Q |
210 |
atgccttgcaggacctaagcaggacatgaccttgtcaatgtcacccccacaatgtcttacacatatgttcatttctcaaatgtta |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36123829 |
atgccttgcaggacctaagcaggacatgaccttgtcaatgtca-ccccacaatgtcttacacatatgttcatttctcaaatgtta |
36123912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 376 - 493
Target Start/End: Original strand, 36123994 - 36124111
Alignment:
| Q |
376 |
ccatcttaactctaatcatgtttcatgaaagagaattcatctctattatcattctcttcattatagccttttgtttcttaccatcctcaacagctgacac |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36123994 |
ccatcttaactctaatcatgtttcatgaaagagaattcatctctattatcattctcttcatgatagccttttgtttcttaccatcctcaacagctgacac |
36124093 |
T |
|
| Q |
476 |
agatgctcaaattctagt |
493 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
36124094 |
agatgctcaaattctagt |
36124111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University