View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19299_high_5 (Length: 447)
Name: NF19299_high_5
Description: NF19299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19299_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 30409431 - 30408997
Alignment:
| Q |
1 |
tcattcccacaaggtttttcaagtgaatatttagctagaaatagtggagtccatttctacaatgatgtgaaaatggtagatgacgtgattgtcaatacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30409431 |
tcattcccacaaggtttttcaagtgaatatttagctagaaatagtggagtccatttctacaatgatgtgaaaatggtagatgacgtgattgtcaatacca |
30409332 |
T |
|
| Q |
101 |
ataatgttgacatacccatatctcgttccgaagaagctagcgatgaaagcactctgcctgaaaattctatccacagcgaggatatcggacaacatcatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30409331 |
ataatgttgacatacccatatctcgttccgaagaagctagcgatgaaagcactctgcctgaaaattctatccacagcgaggatatcggacaacatcatgt |
30409232 |
T |
|
| Q |
201 |
cttagaagcagaacagaaagagatgtctcatgcagcaggagcaaagacctcagaggatggttataattggagaaaatatggccaaaaacaagtaaaaggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30409231 |
cttagaagcagaacagaaagagatgtctcatgcagcaggagcaaagacctcagaggatggttataattggagaaaatatggccaaaaacaagtaaaaggt |
30409132 |
T |
|
| Q |
301 |
agtgaatatccgagaagctactacaaatgtactcattctaattgtcaggtcaagaaaaaggtggaaagatcacacgatggccacataacagaaattattt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30409131 |
agtgaatatccgagaagctactacaaatgtactcattctaattgtcaggtcaagaaaaaggtggaaagatcacacgatggccacataacagaaattattt |
30409032 |
T |
|
| Q |
401 |
acaagggtaatcataaccatgcaaaaccacattca |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
30409031 |
acaagggtaatcataaccatgcaaaaccacattca |
30408997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 135 - 435
Target Start/End: Complemental strand, 30395636 - 30395336
Alignment:
| Q |
135 |
agctagcgatgaaagcactctgcctgaaaattctatccacagcgaggatatcggacaacatcatgtcttagaagcagaacagaaagagatgtctcatgca |
234 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
30395636 |
agctagcgatgaaagcattctgcttgaaaattcaatccacagcaaggatatcggacaacatcatgtcctagaagcagaacagaaagagatatctcatgca |
30395537 |
T |
|
| Q |
235 |
gcaggagcaaagacctcagaggatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccgagaagctactacaaatgtactc |
334 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
30395536 |
gcaggagcaaagaccttacaggatggttataattggagaaaatatggccaaaaacaagtaaaaggcagtgaatatccgagaagctactacaaatgtaatc |
30395437 |
T |
|
| Q |
335 |
attctaattgtcaggtcaagaaaaaggtggaaagatcacacgatggccacataacagaaattatttacaagggtaatcataaccatgcaaaaccacattc |
434 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||||||| |||||| |||||| |||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
30395436 |
agtctaattgtcaggtcaggaaaaaggtggaaagatcacatgatggcaacataagagaaattatttacagtggtaatcataaccatgcaaaaccaaattc |
30395337 |
T |
|
| Q |
435 |
a |
435 |
Q |
| |
|
| |
|
|
| T |
30395336 |
a |
30395336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 26332619 - 26332563
Alignment:
| Q |
256 |
gatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccg |
312 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||||| ||||| || ||| ||||| |
|
|
| T |
26332619 |
gatggttacaattggagaaaatatggacagaaacaagtgaaaggaagcgaaaatccg |
26332563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 253 - 346
Target Start/End: Original strand, 2056297 - 2056390
Alignment:
| Q |
253 |
gaggatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccgagaagctactacaaatgtactcattctaattgtc |
346 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||| || ||||| || || || |||| |||||||| ||||||||||| ||||||| |
|
|
| T |
2056297 |
gaggatggatataattggagaaaatatggccaaaagcaagttaagggtagcgagtaccctcgaagttactacaagtgtactcattcaaattgtc |
2056390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 346
Target Start/End: Complemental strand, 26967134 - 26967038
Alignment:
| Q |
250 |
tcagaggatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccgagaagctactacaaatgtactcattctaattgtc |
346 |
Q |
| |
|
||||| ||||| || ||||||||||||||||| ||||||||||| ||||| |||||| |||| ||||| || || ||||| ||| | ||||||||| |
|
|
| T |
26967134 |
tcagatgatggatacaattggagaaaatatggacaaaaacaagtgaaaggaagtgaaaatccaagaagttattataaatgcacttaccctaattgtc |
26967038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 329
Target Start/End: Complemental strand, 31615428 - 31615355
Alignment:
| Q |
256 |
gatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccgagaagctactacaaatg |
329 |
Q |
| |
|
||||| || |||||| |||||||||| ||||| ||||| || || |||||| |||||||||| ||||||||||| |
|
|
| T |
31615428 |
gatggatacaattggcgaaaatatggacaaaagcaagttaagggaagtgaaaatccgagaagttactacaaatg |
31615355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University