View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19299_low_12 (Length: 273)
Name: NF19299_low_12
Description: NF19299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19299_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 260
Target Start/End: Original strand, 31059396 - 31059649
Alignment:
| Q |
7 |
gctcatcctttcactaatttcaaccactgctcaaaatcaagtaaaacatgttacatgttaaagcattgatgaaataaaaacannnnnnnagtgtagctac |
106 |
Q |
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| T |
31059396 |
gctcatcctttcactaatttcaaccactgctcaaaatcaagtaaaacatgttacatgttaaagcattgatgaaataaaaacatttttttagtgtagctac |
31059495 |
T |
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| Q |
107 |
aaacatgaaataaactaatgatagtatcttactgatgacaaagaaagaagctttccatgcaccagtggaagcacgaagaggaactcttcctttataatca |
206 |
Q |
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| T |
31059496 |
aaacatgaaataaactaatgatagtatcttactgatgacaaagaaagaagctttccatgcaccagtggaagcacgaagaggaactcttcctttataatca |
31059595 |
T |
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| Q |
207 |
aaagaaccatcatacacccatttttcttcattactttcttcacttttatctcct |
260 |
Q |
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| T |
31059596 |
aaagaaccatcatacacccatttttcttcattactttcttcacttttatctcct |
31059649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 247
Target Start/End: Original strand, 31085625 - 31085741
Alignment:
| Q |
131 |
tatcttactgatgacaaagaaagaagctttccatgcaccagtggaagcacgaagaggaactcttcctttataatcaaaagaaccatcatacacccatttt |
230 |
Q |
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| T |
31085625 |
tatcttactgaggacaaagagagaagctatccatacaccagttttagcacgaagaggaacttttcctttacaatccacagaaccatcataaacccatttc |
31085724 |
T |
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| Q |
231 |
tcttcattactttcttc |
247 |
Q |
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| T |
31085725 |
tcttgttcactttcttc |
31085741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 229
Target Start/End: Original strand, 31068934 - 31069032
Alignment:
| Q |
131 |
tatcttactgatgacaaagaaagaagctttccatgcaccagtggaagcacgaagaggaactcttcctttataatcaaaagaaccatcatacacccattt |
229 |
Q |
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| T |
31068934 |
tatcttacttaggacaaagagagaagctatccatacaccagttttagcacgaaggggaactttgcctttacaatccacagaaccatcataaacccattt |
31069032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 6149971 - 6150053
Alignment:
| Q |
147 |
aagaaagaagctttccatgcaccagtggaagcacgaagaggaactcttcctttataatcaaaagaaccatcatacacccattt |
229 |
Q |
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| T |
6149971 |
aagaaagaggctttccaagcaccagttgaagctcggagaggaactcttccattatgatcaaatgaagaatcatgaacccattt |
6150053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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