View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19299_low_20 (Length: 213)
Name: NF19299_low_20
Description: NF19299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19299_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 60 - 195
Target Start/End: Complemental strand, 29199369 - 29199235
Alignment:
| Q |
60 |
gtgaacaatttcaatatagataaatctcaagagnnnnnnntatgaataagagaacatgaagatccaactgttatagtttcttctatagcaaaagagatga |
159 |
Q |
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| T |
29199369 |
gtgaacaatttcaatatagataaatctaaagagaaaaaa-tatgaataagagaacatgacgatccaactgttctagtttcttctatagcaaaatagatga |
29199271 |
T |
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| Q |
160 |
caaagaaacaaataaaagtggaagaagaaaatttat |
195 |
Q |
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| T |
29199270 |
gaaagaaacaaataaaagtggaagaagaaactttat |
29199235 |
T |
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Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 19768956 - 19768890
Alignment:
| Q |
128 |
tgttatagtttcttctatagcaaaagagatgacaaagaaacaaataaaagtggaagaagaaaattta |
194 |
Q |
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| T |
19768956 |
tgttatagtttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaagaaaattta |
19768890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 60 - 187
Target Start/End: Original strand, 25901099 - 25901225
Alignment:
| Q |
60 |
gtgaacaatttcaatatagataaatctcaagagnnnnnnntatgaataagagaacatgaagatccaactgttatagtttcttctatagcaaaagagatga |
159 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| || || ||||||||||||| |||||| |||||| |
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| T |
25901099 |
gtgaacaatttcaatgtagataaatctcaagagaaaaag-tatgaataagagaacatgaagacccatctattctagtttcttctatggcaaaatagatga |
25901197 |
T |
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| Q |
160 |
caaagaaacaaataaaagtggaagaaga |
187 |
Q |
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| T |
25901198 |
gaaagaaacaaataaaagtggaagaaga |
25901225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 6174362 - 6174412
Alignment:
| Q |
14 |
atcatcatcacaggaaaacttttgtctctgttgaaaggcgagaaaagtgaa |
64 |
Q |
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| T |
6174362 |
atcatcatcactggaaaacttttgtctctgttgaaaggtgagaaaagtgaa |
6174412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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