View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19299_low_6 (Length: 444)
Name: NF19299_low_6
Description: NF19299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19299_low_6 |
 | |
|
| [»] scaffold0070 (3 HSPs) |
| | |
|
| [»] scaffold0466 (2 HSPs) |
| | |
|
| [»] scaffold0779 (1 HSPs) |
| | |
|
| [»] scaffold0830 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 17)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 7 - 427
Target Start/End: Original strand, 24895154 - 24895573
Alignment:
| Q |
7 |
tagattatactagaattttatagtaacttttcaatggaattattggttcccaatgaccttacattggtcactatctcctaatcaaaattttaattataaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24895154 |
tagattatactagaattttatagtaacttttcaatgaaattattggttcccaatgaccttacattggtcactatctcctaatcaaaattttaattataaa |
24895253 |
T |
|
| Q |
107 |
aaataaatagccccaaaataatgaacttggacattacgctgatacttagatgtaaaagttacacatatgcatgtaaaattccaccgcttaacaacatgac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24895254 |
aaataaatagccccaaaataatgaacttggacattacgttgatacttagatgtaaaagttacacatatgcatgtaaaattccaccgcctaacaacatgac |
24895353 |
T |
|
| Q |
207 |
tttcttgagggatgttagatttgacgataacaatttaaatgaaagtctaccaactgattttatcaaccagcttccataacttggaaatctcactttatgc |
306 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24895354 |
tttcttgagggatgttagatttgacaataacaatttaaatgaaagtctaccaactgattttatcaacaggcttccataacttggaaatctcactttatgc |
24895453 |
T |
|
| Q |
307 |
aacaatcaatttgaagaaccattccaagatcaattgacaactcacattgatgcactcttagattttacatcaaatgagattattgatgaaccattcgtag |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
24895454 |
aacaatcaatttgaagaaccattccaagatcaattgacaactcacattgatgcactcttagattttacatcaaa-gagattattgatgaaccattcctag |
24895552 |
T |
|
| Q |
407 |
atcaacatgggatgtctcttt |
427 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
24895553 |
atcaacatgggatgtctcttt |
24895573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 7 - 305
Target Start/End: Complemental strand, 25628656 - 25628355
Alignment:
| Q |
7 |
tagattatactagaattttatagtaacttttcaatggaattattggttcccaatgaccttacattggtcactatctcctaatcaaaattttaattataaa |
106 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25628656 |
tagattatacatgaattttataataacttttcaatgaaattattggttctgaatgaccttacattggtctctatctcctaatcaaaattttaattataaa |
25628557 |
T |
|
| Q |
107 |
aaataaatagccccaaaataatgaacttggacattacgctgatacttagatgtaaaagttacacatatgcatgtaaaattccaccgcttaacaacatgac |
206 |
Q |
| |
|
||||||| ||| | |||||||| || |||||| ||| | ||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| |
|
|
| T |
25628556 |
aaataaacagcgctaaaataattaatctggacagtacaataatacttagatgtaaaagttacacatatgcatgtaaaactccattgcttaacaatatgac |
25628457 |
T |
|
| Q |
207 |
tttcttgagggatgttagatttgacgataacaatttaaatgaaagtctaccaactgattttatcaaccagc---ttccataacttggaaatctcacttta |
303 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || || |||||||| ||||||||||||| |
|
|
| T |
25628456 |
tttcttgaggggtgttagatttgacgataataatttaaatgaaagtctaccaactgattttatcaacctgcaactttgataacttgaaaatctcacttta |
25628357 |
T |
|
| Q |
304 |
tg |
305 |
Q |
| |
|
|| |
|
|
| T |
25628356 |
tg |
25628355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 148 - 305
Target Start/End: Complemental strand, 25326362 - 25326206
Alignment:
| Q |
148 |
atacttagatgtaaaagttacacatatgcatgtaaaattccaccgcttaacaacatgactttcttgagggatgttagatttgacgataacaatttaaatg |
247 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25326362 |
atacttagatttaaaagttacacatatgcatgtaaaattcgaccgcttaacaacatgactttcttgagggatgttagatttgacgataacaatttaaatg |
25326263 |
T |
|
| Q |
248 |
aaagtctaccaactgattttatcaaccagcttccataacttggaaatctcactttatg |
305 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25326262 |
aaagtctaccaactgatttt-tcaaccagcttccataacttgaaaatctcactttatg |
25326206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 242 - 419
Target Start/End: Complemental strand, 25705010 - 25704827
Alignment:
| Q |
242 |
taaatgaaagtctaccaactgattttatcaaccagcttccataacttggaaatctcactttatgcaacaatcaatttgaagaaccattccaagatcaatt |
341 |
Q |
| |
|
|||||| | ||||||||||||||||||| || ||| |||| | ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25705010 |
taaatggatgtctaccaactgattttatgaatcagattccttgacttgaaaatttcactttatgcaacaatcaatttgaagaaccattccaagatcaatt |
25704911 |
T |
|
| Q |
342 |
gacaactcacattgatgcactcttagattttacatcaaatgagattattg------atgaaccattcgtagatcaacatgggat |
419 |
Q |
| |
|
| |||||||||| | |||||||||||| ||||||||| ||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
25704910 |
ggcaactcacatggctgcactcttagacattacatcaactgagattattgtttctcatgaaccattcctagatcaacatgggat |
25704827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 315 - 427
Target Start/End: Complemental strand, 25326158 - 25326040
Alignment:
| Q |
315 |
atttgaagaaccattccaagatcaattgacaactcacattgatgcactcttagattttacatcaaatgagattattg------atgaaccattcgtagat |
408 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
25326158 |
atttgaataaccattccaagatcaattgacaattcacagtgatgcactcttaaattttacatcaaatgagattattgtttctcatgaaccatttctagat |
25326059 |
T |
|
| Q |
409 |
caacatgggatgtctcttt |
427 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
25326058 |
caacatgggatgtctcttt |
25326040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 334 - 427
Target Start/End: Complemental strand, 25628286 - 25628187
Alignment:
| Q |
334 |
gatcaattgacaactcacattgatgcactcttagattttacatcaaatgagattattg------atgaaccattcgtagatcaacatgggatgtctcttt |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
25628286 |
gatcaattgacaactcacattgatgcactcttagattttacataaaatgagattattgtttctcatgaaccattcctagatcaacatgggatatctcttt |
25628187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 164 - 340
Target Start/End: Complemental strand, 25806525 - 25806348
Alignment:
| Q |
164 |
gttacacatatgcatgtaaaattccaccgcttaacaacatgactttcttgagggatgttagatttgacgataacaatttaaatgaaagtctaccaactga |
263 |
Q |
| |
|
|||||||| ||||| || |||||||||||||||||||| |||||| ||| ||| || | |||| | ||||||||||||||| ||| ||||||||||| |
|
|
| T |
25806525 |
gttacacacatgcaggtgaaattccaccgcttaacaacctgacttctttgtgggtggtcaaatttagccataacaatttaaatggaagactaccaactga |
25806426 |
T |
|
| Q |
264 |
ttttatcaaccagcttccataacttggaaatctcactttatgcaacaatcaatttgaa-gaaccattccaagatcaat |
340 |
Q |
| |
|
|||| |||| |||||||| ||||| | || | |||||||| ||||||||||||||| ||| ||||||| ||||||| |
|
|
| T |
25806425 |
ttttttcaatcagcttcctcaacttaaatatttaactttatggaacaatcaatttgaaggaagcattccacgatcaat |
25806348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 164 - 340
Target Start/End: Complemental strand, 25811555 - 25811378
Alignment:
| Q |
164 |
gttacacatatgcatgtaaaattccaccgcttaacaacatgactttcttgagggatgttagatttgacgataacaatttaaatgaaagtctaccaactga |
263 |
Q |
| |
|
|||||||| ||||| || |||||||||||||||||||| |||||| ||| ||| || | |||| | ||||||||||||||| ||| ||||||||||| |
|
|
| T |
25811555 |
gttacacacatgcaggtgaaattccaccgcttaacaacctgacttctttgtgggtggtcaaatttagccataacaatttaaatggaagactaccaactga |
25811456 |
T |
|
| Q |
264 |
ttttatcaaccagcttccataacttggaaatctcactttatgcaacaatcaatttgaa-gaaccattccaagatcaat |
340 |
Q |
| |
|
|||| |||| |||||||| ||||| | || | |||||||| ||||||||||||||| ||| ||||||| ||||||| |
|
|
| T |
25811455 |
ttttttcaatcagcttcctcaacttaaatatttaactttatggaacaatcaatttgaaggaagcattccacgatcaat |
25811378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 164 - 340
Target Start/End: Complemental strand, 25824249 - 25824072
Alignment:
| Q |
164 |
gttacacatatgcatgtaaaattccaccgcttaacaacatgactttcttgagggatgttagatttgacgataacaatttaaatgaaagtctaccaactga |
263 |
Q |
| |
|
|||||||| ||||| || |||||||||||||||||||| |||||| ||| ||| || | |||| | ||||||||||||||| ||| ||||||||||| |
|
|
| T |
25824249 |
gttacacacatgcaggtgaaattccaccgcttaacaacctgacttctttgtgggtggtcaaatttagccataacaatttaaatggaagactaccaactga |
25824150 |
T |
|
| Q |
264 |
ttttatcaaccagcttccataacttggaaatctcactttatgcaacaatcaatttgaa-gaaccattccaagatcaat |
340 |
Q |
| |
|
|||| |||| |||||||| ||||| | || | |||||||| ||||||||||||||| ||| ||||||| ||||||| |
|
|
| T |
25824149 |
ttttttcaatcagcttcctcaacttaaatatttaactttatggaacaatcaatttgaaggaagcattccacgatcaat |
25824072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 164 - 342
Target Start/End: Complemental strand, 25590869 - 25590690
Alignment:
| Q |
164 |
gttacacatatgcatgtaaaattccaccgcttaacaacatgactttcttgagggatgttagatttgacgataacaatttaaatgaaagtctaccaactga |
263 |
Q |
| |
|
|||||||| |||| ||||||||| | | ||| ||||||||||| ||||||| |||| | ||| | |||||||||||||| ||||||||||| ||| |
|
|
| T |
25590869 |
gttacacacttgcaagtaaaattctatcacttgtcaacatgacttcgttgagggtggttaaacttggctttaacaatttaaatggaagtctaccaaatga |
25590770 |
T |
|
| Q |
264 |
ttttatcaaccagcttccataacttggaaatctcactttatgcaacaatcaatttgaa-gaaccattccaagatcaattg |
342 |
Q |
| |
|
|||| |||| ||||||||| |||||| || ||| |||||| |||||||||||||||| ||| |||| || ||||||||| |
|
|
| T |
25590769 |
ttttttcaatcagcttccacaacttgaaagtcttactttaaacaacaatcaatttgaaggaagcatttcacgatcaattg |
25590690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 342
Target Start/End: Complemental strand, 25395187 - 25395008
Alignment:
| Q |
164 |
gttacacatatgcatgtaaaattccaccgcttaacaacatgactttcttgagggatgttaga-tttgacgataacaatttaaatgaaagtctaccaactg |
262 |
Q |
| |
|
|||||||| ||||| || |||||||| |||||||||||||||||| ||||||| || |||| |||| | |||||||||||||| ||| ||||||| || |
|
|
| T |
25395187 |
gttacacacatgcaggtgaaattccatcgcttaacaacatgacttatttgaggg-tggtagactttggctttaacaatttaaatggaagactaccaaatg |
25395089 |
T |
|
| Q |
263 |
attttatcaaccagcttccataacttggaaatctcactttatgcaacaatcaatttgaa-gaaccattccaagatcaattg |
342 |
Q |
| |
|
||||| |||| |||||||| |||| ||||| | | |||| |||||||||||||||| ||| ||||||| |||||||| |
|
|
| T |
25395088 |
attttttcaatcagcttcctcaactcagaaattttaatttaaacaacaatcaatttgaaggaagcattccacaatcaattg |
25395008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 164 - 342
Target Start/End: Complemental strand, 25370431 - 25370252
Alignment:
| Q |
164 |
gttacacatatgcatgtaaaattccaccgcttaacaacatgactttcttgagggatgttagatttgacgataacaatttaaatgaaagtctaccaactga |
263 |
Q |
| |
|
|||||||| ||||| || |||||||| |||||||||||||||||| |||| || || | ||||| || |||||||||||||| ||| |||||| ||| |
|
|
| T |
25370431 |
gttacacacatgcaggtgaaattccatcgcttaacaacatgacttctttgaaggtggtcaaatttggcgttaacaatttaaatggaagattaccaaatga |
25370332 |
T |
|
| Q |
264 |
ttttatcaaccagcttccataacttggaaatctcactttatgcaacaatcaatttgaa-gaaccattccaagatcaattg |
342 |
Q |
| |
|
|||| |||| |||||||| ||||| || | | || ||| |||||||||||||||| ||| ||||||| |||||||| |
|
|
| T |
25370331 |
ttttttcaatcagcttcctcaacttcaaatttttacattacacaacaatcaatttgaaggaagcattccacaatcaattg |
25370252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 164 - 342
Target Start/End: Complemental strand, 25726200 - 25726021
Alignment:
| Q |
164 |
gttacacatatgcatgtaaaattccaccgcttaacaacatgactttcttgagggatgttagatttgacgataacaatttaaatgaaagtctaccaactga |
263 |
Q |
| |
|
|||||||| ||| | || |||||||| |||||| ||||||||||| ||||||| || | ||||| | |||||||||||||| ||| ||||||| ||| |
|
|
| T |
25726200 |
gttacacacatgtaggtgaaattccatcgcttaccaacatgacttctttgagggtggtcaaatttggctttaacaatttaaatggaagactaccaaatga |
25726101 |
T |
|
| Q |
264 |
ttttatcaaccagcttccataacttggaaatctcactttatgcaacaatcaatttgaa-gaaccattccaagatcaattg |
342 |
Q |
| |
|
|||| |||| || ||||| |||| | |||| | |||||| |||||||||||||||| ||| ||||||| |||||||| |
|
|
| T |
25726100 |
ttttttcaatcaacttcctcaactcgaaaattttactttaaacaacaatcaatttgaaggaagcattccacaatcaattg |
25726021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 281
Target Start/End: Complemental strand, 25626252 - 25626135
Alignment:
| Q |
164 |
gttacacatatgcatgtaaaattccaccgcttaacaacatgactttcttgagggatgttagatttgacgataacaatttaaatgaaagtctaccaactga |
263 |
Q |
| |
|
|||||||| ||||| | |||||||| ||||||||||||||||| ||||||| || | ||||| | ||||||||||||||| ||| ||||||| ||| |
|
|
| T |
25626252 |
gttacacacatgcagatgaaattccatagcttaacaacatgacttctttgagggtggtcaaatttggccataacaatttaaatggaagactaccaaatga |
25626153 |
T |
|
| Q |
264 |
ttttatcaaccagcttcc |
281 |
Q |
| |
|
|||| |||| ||||||| |
|
|
| T |
25626152 |
ttttttcaataagcttcc |
25626135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 342
Target Start/End: Complemental strand, 25498379 - 25498270
Alignment:
| Q |
234 |
taacaatttaaatgaaagtctaccaactgattttatcaaccagcttccataacttggaaatctcactttatgcaacaatcaatttgaa-gaaccattcca |
332 |
Q |
| |
|
|||||||||||||| ||| ||||||| ||| ||| |||| |||||||| |||| | | || | |||||| | ||||||||||||||| ||| ||||||| |
|
|
| T |
25498379 |
taacaatttaaatggaagactaccaaatgagtttttcaatcagcttcctcaactcgaagattttactttaaggaacaatcaatttgaaggaagcattcca |
25498280 |
T |
|
| Q |
333 |
agatcaattg |
342 |
Q |
| |
|
||||||||| |
|
|
| T |
25498279 |
cgatcaattg |
25498270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 294
Target Start/End: Original strand, 24871830 - 24871951
Alignment:
| Q |
173 |
atgcatgtaaaattccaccgcttaacaacatgactttcttgagggatgttagatttgacgataacaatttaaatgaaagtctaccaactgattttatcaa |
272 |
Q |
| |
|
||||| |||||||| || |||||||||||||||||| ||||||| || | |||| || |||||||||| |||| | | |||||| |||| || |||| |
|
|
| T |
24871830 |
atgcaagtaaaattgcatcgcttaacaacatgacttctttgagggtggtcaaatttaactataacaatttgaatggcaatttaccaaatgatattttcaa |
24871929 |
T |
|
| Q |
273 |
ccagcttccataacttggaaat |
294 |
Q |
| |
|
|||||||| |||||| |||| |
|
|
| T |
24871930 |
tcagcttcctcaacttgaaaat |
24871951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 25326406 - 25326366
Alignment:
| Q |
29 |
gtaacttttcaatggaattattggttcccaatgaccttaca |
69 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||| |||||| |
|
|
| T |
25326406 |
gtaacttttcaatgaaattattggttctcaatgaacttaca |
25326366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 305
Target Start/End: Original strand, 31494 - 31792
Alignment:
| Q |
7 |
tagattatactagaattttatagtaacttttcaatggaattattggttcccaatgaccttacattggtcactatctcctaatcaaaattttaattataaa |
106 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
31494 |
tagattatacttgaattttataataacttttcaatgaaattattggttctcaatgaccttacattggtctctatcttctaatcaaaattttaattataaa |
31593 |
T |
|
| Q |
107 |
aaataaatagccccaaaataatgaacttggacattacgctgatacttagatgtaaaagttacacatatgcatgtaaaattccaccgcttaacaacatgac |
206 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31594 |
aaataaatagccccaaaataattaacttggacagtacaataatacttagatgtaaaagttacacatatgcatgtaaaattccaccgcttaacaacataac |
31693 |
T |
|
| Q |
207 |
tttcttgagggatgttagatttgacgataacaatttaaatgaaagtctaccaactgattttatcaaccagcttccataacttggaaatctcactttatg |
305 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| | |||| |||||||||| |
|
|
| T |
31694 |
tttttttagggatgttagatttgacgataacaatttaaatgaaagtctatcgactgattttatcaaccagcttccataacataaaaatatcactttatg |
31792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 229 - 423
Target Start/End: Original strand, 52332 - 52532
Alignment:
| Q |
229 |
gacgataacaatttaaatgaaagtctaccaactgattttatcaaccagcttccataacttggaaatctcactttatgcaacaatcaatttgaagaaccat |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
52332 |
gacgataacaatttaaatgaaagtctaccaactgattttatcaaccagcttccataacttgaaaatatcactttatgcaacaattaatttgaagaaccat |
52431 |
T |
|
| Q |
329 |
tccaagatcaattgacaactcacattgatgcactcttagattttacatcaaatgagattattg------atgaaccattcgtagatcaacatgggatgtc |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
52432 |
tccaagatcaattgacaactcacattgatgcactcttagattttacattaaatgagattattgtttctcatgaaccattcctagatcaacatgggatgtc |
52531 |
T |
|
| Q |
423 |
t |
423 |
Q |
| |
|
| |
|
|
| T |
52532 |
t |
52532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 315 - 427
Target Start/End: Original strand, 31849 - 31967
Alignment:
| Q |
315 |
atttgaagaaccattccaagatcaattgacaactcacattgatgcactcttagattttacatcaaatgagattattg------atgaaccattcgtagat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||| |
|
|
| T |
31849 |
atttgaagaaccattccaagatcaattgacaactcacattgatgaactcttagattttacattaaatgagattattgtttctcatgaaccattcctagat |
31948 |
T |
|
| Q |
409 |
caacatgggatgtctcttt |
427 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
31949 |
caacatgggatgtctcttt |
31967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 148 - 305
Target Start/End: Original strand, 498 - 655
Alignment:
| Q |
148 |
atacttagatgtaaaagttacacatatgcatgtaaaattccaccgcttaacaacatgactttcttgagggatgttagatttgacgataacaatttaaatg |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
498 |
atacttagatgtaaaagttacacatatgcatgtaatattccaccgcttaacgatatgactttcttgagggaagttagatttgacgataacaatttaaatg |
597 |
T |
|
| Q |
248 |
aaagtctaccaactgattttatcaaccagcttccataacttggaaatctcactttatg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
598 |
aaagtctaccaactgattttatcaaccagcttccataagttgaaaatctcactttatg |
655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 342
Target Start/End: Original strand, 2292 - 2471
Alignment:
| Q |
164 |
gttacacatatgcatgtaaaattccaccgcttaacaacatgactttcttgagggatgttagatttgacgataacaatttaaatgaaagtctaccaactga |
263 |
Q |
| |
|
|||||||| ||||| || |||||||| ||||||||| ||||||| ||||||| || | |||| | |||||||||||||| ||| || |||| ||| |
|
|
| T |
2292 |
gttacacacatgcaggtgaaattccatggcttaacaatatgacttctttgagggtggtcaactttgcctttaacaatttaaatggaagactgccaaatga |
2391 |
T |
|
| Q |
264 |
ttttatcaaccagcttccataacttggaaatctcactttatgcaacaatcaatttgaa-gaaccattccaagatcaattg |
342 |
Q |
| |
|
|||| |||| |||||||| |||| ||||| | | ||||| |||||||||||||||| ||| ||||||| |||||||| |
|
|
| T |
2392 |
ttttttcaatcagcttcctcaactcagaaattttagtttatacaacaatcaatttgaaggaagcattccacaatcaattg |
2471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 169 - 340
Target Start/End: Complemental strand, 10330794 - 10330622
Alignment:
| Q |
169 |
acatatgcatgtaaaattccaccgcttaacaacatgactttcttgagggatgttagatttgacgataacaatttaaatgaaagtctaccaactgatttta |
268 |
Q |
| |
|
||||||| | ||||||||||| ||||||| || ||||||| ||||||| || | ||| | ||||||||||||||| ||| ||||||| ||||||| |
|
|
| T |
10330794 |
acatatgtaggtaaaattccatcgcttaataaaatgacttctttgagggtggtcgaacttgccaataacaatttaaatggaagactaccaaatgattttt |
10330695 |
T |
|
| Q |
269 |
tcaaccagcttccataacttggaaatctcactttatgcaacaatcaatttgaa-gaaccattccaagatcaat |
340 |
Q |
| |
|
|||| |||||||| |||||| | |||| || ||| | |||||||||||||| ||| ||||||||||||||| |
|
|
| T |
10330694 |
tcaatcagcttcctcaacttgaagatcttacattaaccgacaatcaatttgaaggaagcattccaagatcaat |
10330622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0779 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0779
Description:
Target: scaffold0779; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 164 - 342
Target Start/End: Original strand, 598 - 777
Alignment:
| Q |
164 |
gttacacatatgcatgtaaaattccaccgcttaacaacatgactttcttgagggatgttagatttgacgataacaatttaaatgaaagtctaccaactga |
263 |
Q |
| |
|
||||||||| |||| |||| |||||| | |||||||||||||||| ||||||| || | ||||| | | |||| |||||||| ||||||||| | ||| |
|
|
| T |
598 |
gttacacatgtgcaggtaacattccatcacttaacaacatgacttctttgagggtggtcaaatttggctacaacagtttaaatggaagtctaccgaatga |
697 |
T |
|
| Q |
264 |
ttttatcaaccagcttccataacttggaaatctcactttatgcaacaatcaatttgaa-gaaccattccaagatcaattg |
342 |
Q |
| |
|
|||| |||| || | ||| |||||| |||| | | |||| |||||||||||||||| ||| ||||||| ||||||||| |
|
|
| T |
698 |
ttttttcaatcaacatcctcaacttgaaaatttaattttaaacaacaatcaatttgaaggaagcattccacgatcaattg |
777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0830 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0830
Description:
Target: scaffold0830; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 349
Target Start/End: Original strand, 1200 - 1386
Alignment:
| Q |
164 |
gttacacatatgcatgtaaaattccaccgcttaacaacatgactttcttgagggatgttagatttgacgataacaatttaaatgaaagtctaccaactga |
263 |
Q |
| |
|
|||||||| |||| ||||||||||| | |||||||||||||||| |||| || | | ||| | |||||||||||||||| ||||||||||| ||| |
|
|
| T |
1200 |
gttacacacgtgcaggtaaaattccatcacttaacaacatgacttctttgatggctatcttttttaatgataacaatttaaatggaagtctaccaaatga |
1299 |
T |
|
| Q |
264 |
ttttatcaaccagcttccataacttggaaatctcactttatgcaacaatcaatttgaa-gaaccattccaagatcaattgacaactc |
349 |
Q |
| |
|
|||| |||| || ||||| |||||| | || | ||||| ||||||||| |||||| ||| ||||||| ||||||||| |||||| |
|
|
| T |
1300 |
ttttttcaatcatcttcctcaacttgaagatttttctttagacaacaatcattttgaaggaagcattccacgatcaattggcaactc |
1386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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