View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19299_low_8 (Length: 366)

Name: NF19299_low_8
Description: NF19299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19299_low_8
NF19299_low_8
[»] chr4 (8 HSPs)
chr4 (185-361)||(32662915-32663089)
chr4 (32-165)||(32662658-32662800)
chr4 (61-102)||(9064874-9064915)
chr4 (60-99)||(7512772-7512811)
chr4 (60-99)||(28010135-28010174)
chr4 (61-99)||(13389025-13389063)
chr4 (67-99)||(44171654-44171686)
chr4 (60-96)||(52556467-52556503)
[»] chr5 (7 HSPs)
chr5 (59-99)||(15208824-15208864)
chr5 (59-99)||(38682933-38682973)
chr5 (60-99)||(36136946-36136985)
chr5 (59-98)||(37191250-37191289)
chr5 (62-99)||(7670371-7670408)
chr5 (59-99)||(16371555-16371595)
chr5 (60-100)||(40595961-40596001)
[»] chr1 (5 HSPs)
chr1 (59-99)||(35010672-35010712)
chr1 (60-99)||(15906251-15906290)
chr1 (60-99)||(39467029-39467068)
chr1 (60-102)||(49500863-49500905)
chr1 (61-102)||(2112749-2112790)
[»] chr8 (6 HSPs)
chr8 (60-99)||(24654979-24655018)
chr8 (60-99)||(25250790-25250829)
chr8 (60-99)||(25893856-25893895)
chr8 (60-102)||(5682307-5682349)
chr8 (60-102)||(39333947-39333989)
chr8 (44-101)||(43330620-43330676)
[»] chr7 (7 HSPs)
chr7 (60-99)||(6596547-6596586)
chr7 (60-99)||(7312537-7312576)
chr7 (60-99)||(17895639-17895678)
chr7 (60-99)||(29151588-29151627)
chr7 (60-102)||(10061100-10061142)
chr7 (62-99)||(47182808-47182845)
chr7 (62-102)||(26794914-26794954)
[»] chr3 (8 HSPs)
chr3 (60-99)||(4976792-4976831)
chr3 (60-99)||(6083225-6083264)
chr3 (60-99)||(10473998-10474037)
chr3 (60-99)||(47408845-47408884)
chr3 (60-102)||(24751755-24751797)
chr3 (62-96)||(44791717-44791751)
chr3 (61-97)||(2558754-2558790)
chr3 (59-99)||(24910371-24910411)
[»] chr2 (8 HSPs)
chr2 (60-99)||(6731547-6731586)
chr2 (59-102)||(11011978-11012020)
chr2 (60-99)||(42200946-42200985)
chr2 (62-100)||(7315847-7315885)
chr2 (60-102)||(7975098-7975140)
chr2 (61-99)||(28855499-28855537)
chr2 (59-99)||(24381250-24381290)
chr2 (59-99)||(34481754-34481794)
[»] chr6 (2 HSPs)
chr6 (61-99)||(23383141-23383179)
chr6 (59-99)||(32107918-32107958)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 185 - 361
Target Start/End: Original strand, 32662915 - 32663089
Alignment:
Q  185 aaagttctaatattatttcatttttacacttcaatggtatatatttccacattttttgaatggatacaaatccgtgcatataaagtcactaaagatgtca 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32662915 aaagttctaatattatttcatttttacacttcaatggtatatatttccacattttttgaatggatacaaatccgtgcatataaagtcactaaagatgtca 32663014  T
Q  285 tggatttcaatgttatttccttnnnnnnntaattcctacttgagaggatactaatccgtgcatataaagatgccata 361  Q
    |||||||||||||||||||||         ||||||||||||||||||||||||| |||||||||||||||||||||    
T  32663015 tggatttcaatgttatttcct--aaaaaaaaattcctacttgagaggatactaattcgtgcatataaagatgccata 32663089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 32 - 165
Target Start/End: Original strand, 32662658 - 32662800
Alignment:
Q  32 caggatttgagtccgatcagagtgtctagcctaacaattttagcattttgctagttgagctaggacttgtgtacaattctctccagtttc--ctcgtgtt 129  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||  ||||||||    
T  32662658 caggatttgagtctgatcagagtgtctggcctaacaattttagcattttgctagttgagctaggacttgtgtacaattctctcccgtctcctctcgtgtt 32662757  T
Q  130 -------attttcacatttcaacacttaaataacttttcttcc 165  Q
           |||||||| ||||||| |||||||||||||||||||    
T  32662758 tttcttaattttcacgtttcaacccttaaataacttttcttcc 32662800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 9064874 - 9064915
Alignment:
Q  61 cctaacaattttagcattttgctagttgagctaggacttgtg 102  Q
    ||||||||||| |||||||| |||||||||||||||||||||    
T  9064874 cctaacaatttcagcattttactagttgagctaggacttgtg 9064915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 7512811 - 7512772
Alignment:
Q  60 gcctaacaattttagcattttgctagttgagctaggactt 99  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  7512811 gcctaacaattttggcattttgccagttgagctaggactt 7512772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 28010135 - 28010174
Alignment:
Q  60 gcctaacaattttagcattttgctagttgagctaggactt 99  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  28010135 gcctaacaattttggcattttgccagttgagctaggactt 28010174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 13389063 - 13389025
Alignment:
Q  61 cctaacaattttagcattttgctagttgagctaggactt 99  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  13389063 cctaacaatttcagcattttgccagttgagctaggactt 13389025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 44171686 - 44171654
Alignment:
Q  67 aattttagcattttgctagttgagctaggactt 99  Q
    |||||| ||||||||||||||||||||||||||    
T  44171686 aattttggcattttgctagttgagctaggactt 44171654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 52556467 - 52556503
Alignment:
Q  60 gcctaacaattttagcattttgctagttgagctagga 96  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  52556467 gcctaacaattttggcattttgccagttgagctagga 52556503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 15208824 - 15208864
Alignment:
Q  59 agcctaacaattttagcattttgctagttgagctaggactt 99  Q
    ||||||| |||||| ||||||||||||||||||||||||||    
T  15208824 agcctaataatttttgcattttgctagttgagctaggactt 15208864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 38682973 - 38682933
Alignment:
Q  59 agcctaacaattttagcattttgctagttgagctaggactt 99  Q
    |||||||||||||| ||||||||| ||||||||||||||||    
T  38682973 agcctaacaattttggcattttgccagttgagctaggactt 38682933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 36136946 - 36136985
Alignment:
Q  60 gcctaacaattttagcattttgctagttgagctaggactt 99  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  36136946 gcctaacaatttcggcattttgctagttgagctaggactt 36136985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 37191289 - 37191250
Alignment:
Q  59 agcctaacaattttagcattttgctagttgagctaggact 98  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  37191289 agcctaacaattttggcattttgccagttgagctaggact 37191250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 7670408 - 7670371
Alignment:
Q  62 ctaacaattttagcattttgctagttgagctaggactt 99  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  7670408 ctaacaattttagcattttgccagttgagctagaactt 7670371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 16371555 - 16371595
Alignment:
Q  59 agcctaacaattttagcattttgctagttgagctaggactt 99  Q
    |||||||||||||| ||||||||| |||||| |||||||||    
T  16371555 agcctaacaattttggcattttgccagttgaactaggactt 16371595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 40596001 - 40595961
Alignment:
Q  60 gcctaacaattttagcattttgctagttgagctaggacttg 100  Q
    ||||||||||||  ||||||||| |||||||||||||||||    
T  40596001 gcctaacaatttcggcattttgccagttgagctaggacttg 40595961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 35010672 - 35010712
Alignment:
Q  59 agcctaacaattttagcattttgctagttgagctaggactt 99  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  35010672 agcctaacaatttcggcattttgctagttgagctaggactt 35010712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 15906251 - 15906290
Alignment:
Q  60 gcctaacaattttagcattttgctagttgagctaggactt 99  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  15906251 gcctaacaatttcggcattttgctagttgagctaggactt 15906290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 39467068 - 39467029
Alignment:
Q  60 gcctaacaattttagcattttgctagttgagctaggactt 99  Q
    |||||||||||||| |||||||| ||||||||||||||||    
T  39467068 gcctaacaattttaccattttgccagttgagctaggactt 39467029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 49500905 - 49500863
Alignment:
Q  60 gcctaacaattttagcattttgctagttgagctaggacttgtg 102  Q
    ||||||||||||  ||||||||| |||||||||||||||||||    
T  49500905 gcctaacaatttcggcattttgccagttgagctaggacttgtg 49500863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 2112790 - 2112749
Alignment:
Q  61 cctaacaattttagcattttgctagttgagctaggacttgtg 102  Q
    |||||| |||| | ||||||||||||||||||||||||||||    
T  2112790 cctaacgatttcatcattttgctagttgagctaggacttgtg 2112749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 24655018 - 24654979
Alignment:
Q  60 gcctaacaattttagcattttgctagttgagctaggactt 99  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  24655018 gcctaacaattttggcattttgccagttgagctaggactt 24654979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 25250829 - 25250790
Alignment:
Q  60 gcctaacaattttagcattttgctagttgagctaggactt 99  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  25250829 gcctaacaattttggcattttgccagttgagctaggactt 25250790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 25893895 - 25893856
Alignment:
Q  60 gcctaacaattttagcattttgctagttgagctaggactt 99  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  25893895 gcctaacaatttcagcattttgccagttgagctaggactt 25893856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 5682307 - 5682349
Alignment:
Q  60 gcctaacaattttagcattttgctagttgagctaggacttgtg 102  Q
    |||||||||||| | ||||||||||||||||| ||||||||||    
T  5682307 gcctaacaatttcaacattttgctagttgagcgaggacttgtg 5682349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 39333989 - 39333947
Alignment:
Q  60 gcctaacaattttagcattttgctagttgagctaggacttgtg 102  Q
    ||||||||| ||||||||||||| |||| ||||||||||||||    
T  39333989 gcctaacaagtttagcattttgccagttaagctaggacttgtg 39333947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 43330676 - 43330620
Alignment:
Q  44 ccgatcagagtgtctagcctaacaattttagcattttgctagttgagctaggacttgt 101  Q
    |||||||  |||||| ||||||||||||| ||||||||| ||||||| ||||||||||    
T  43330676 ccgatcatggtgtctggcctaacaattttggcattttgc-agttgagttaggacttgt 43330620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 6596586 - 6596547
Alignment:
Q  60 gcctaacaattttagcattttgctagttgagctaggactt 99  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  6596586 gcctaacaattttggcattttgccagttgagctaggactt 6596547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 7312537 - 7312576
Alignment:
Q  60 gcctaacaattttagcattttgctagttgagctaggactt 99  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  7312537 gcctaacaattttggcattttgccagttgagctaggactt 7312576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 17895678 - 17895639
Alignment:
Q  60 gcctaacaattttagcattttgctagttgagctaggactt 99  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  17895678 gcctaacaatttcagcattttgccagttgagctaggactt 17895639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 29151627 - 29151588
Alignment:
Q  60 gcctaacaattttagcattttgctagttgagctaggactt 99  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  29151627 gcctaacaatttcagcattttgccagttgagctaggactt 29151588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 10061100 - 10061142
Alignment:
Q  60 gcctaacaattttagcattttgctagttgagctaggacttgtg 102  Q
    ||||||||||||  ||||||||| |||||||||||||||||||    
T  10061100 gcctaacaatttcggcattttgccagttgagctaggacttgtg 10061142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 47182845 - 47182808
Alignment:
Q  62 ctaacaattttagcattttgctagttgagctaggactt 99  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  47182845 ctaacaattttggcattttgccagttgagctaggactt 47182808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 26794954 - 26794914
Alignment:
Q  62 ctaacaattttagcattttgctagttgagctaggacttgtg 102  Q
    ||||||||||| |||||||||  ||||||||||||||||||    
T  26794954 ctaacaattttggcattttgccggttgagctaggacttgtg 26794914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 4976792 - 4976831
Alignment:
Q  60 gcctaacaattttagcattttgctagttgagctaggactt 99  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  4976792 gcctaacaattttggcattttgccagttgagctaggactt 4976831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 6083225 - 6083264
Alignment:
Q  60 gcctaacaattttagcattttgctagttgagctaggactt 99  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  6083225 gcctaacaatttcggcattttgctagttgagctaggactt 6083264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 10473998 - 10474037
Alignment:
Q  60 gcctaacaattttagcattttgctagttgagctaggactt 99  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  10473998 gcctaacaatttcagcattttgccagttgagctaggactt 10474037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 47408884 - 47408845
Alignment:
Q  60 gcctaacaattttagcattttgctagttgagctaggactt 99  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  47408884 gcctaacaatttcggcattttgctagttgagctaggactt 47408845  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 24751797 - 24751755
Alignment:
Q  60 gcctaacaattttagcattttgctagttgagctaggacttgtg 102  Q
    ||||||||||||  ||||||||| |||||||||||||||||||    
T  24751797 gcctaacaatttcggcattttgccagttgagctaggacttgtg 24751755  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 96
Target Start/End: Complemental strand, 44791751 - 44791717
Alignment:
Q  62 ctaacaattttagcattttgctagttgagctagga 96  Q
    ||||||||||||||||||||| |||||||||||||    
T  44791751 ctaacaattttagcattttgccagttgagctagga 44791717  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 2558790 - 2558754
Alignment:
Q  61 cctaacaattttagcattttgctagttgagctaggac 97  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  2558790 cctaacaatttcagcattttgccagttgagctaggac 2558754  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 24910371 - 24910411
Alignment:
Q  59 agcctaacaattttagcattttgctagttgagctaggactt 99  Q
    |||||||||||||  ||||||||| ||||||||||||||||    
T  24910371 agcctaacaatttcggcattttgccagttgagctaggactt 24910411  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 6731586 - 6731547
Alignment:
Q  60 gcctaacaattttagcattttgctagttgagctaggactt 99  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  6731586 gcctaacaatttcggcattttgctagttgagctaggactt 6731547  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 11012020 - 11011978
Alignment:
Q  59 agcctaacaattttagcattttgctagttgagctaggacttgtg 102  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||    
T  11012020 agcctaacaatttcagcattt-gctagttgagctaggacttgtg 11011978  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 42200946 - 42200985
Alignment:
Q  60 gcctaacaattttagcattttgctagttgagctaggactt 99  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  42200946 gcctaacaattttggcattttgccagttgagctaggactt 42200985  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 100
Target Start/End: Original strand, 7315847 - 7315885
Alignment:
Q  62 ctaacaattttagcattttgctagttgagctaggacttg 100  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  7315847 ctaacaatttcagcattttgttagttgagctaggacttg 7315885  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 7975098 - 7975140
Alignment:
Q  60 gcctaacaattttagcattttgctagttgagctaggacttgtg 102  Q
    ||||||||||||  ||||||||| |||||||||||||||||||    
T  7975098 gcctaacaatttcggcattttgccagttgagctaggacttgtg 7975140  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 28855499 - 28855537
Alignment:
Q  61 cctaacaattttagcattttgctagttgagctaggactt 99  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  28855499 cctaacaattttggcattttgccagttgagctaggactt 28855537  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 24381290 - 24381250
Alignment:
Q  59 agcctaacaattttagcattttgctagttgagctaggactt 99  Q
    |||||||||||||   |||||||||||||||||||||||||    
T  24381290 agcctaacaatttcgacattttgctagttgagctaggactt 24381250  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 34481754 - 34481794
Alignment:
Q  59 agcctaacaattttagcattttgctagttgagctaggactt 99  Q
    |||||||||||||  ||||||||| ||||||||||||||||    
T  34481754 agcctaacaatttcggcattttgccagttgagctaggactt 34481794  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 23383141 - 23383179
Alignment:
Q  61 cctaacaattttagcattttgctagttgagctaggactt 99  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  23383141 cctaacaatttcagcattttgctagttgaactaggactt 23383179  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 32107918 - 32107958
Alignment:
Q  59 agcctaacaattttagcattttgctagttgagctaggactt 99  Q
    |||||||||||||  ||||||||| ||||||||||||||||    
T  32107918 agcctaacaatttcggcattttgccagttgagctaggactt 32107958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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