View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1929_high_1 (Length: 804)

Name: NF1929_high_1
Description: NF1929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1929_high_1
NF1929_high_1
[»] chr2 (2 HSPs)
chr2 (456-712)||(14240197-14240453)
chr2 (266-428)||(14240481-14240643)
[»] chr4 (1 HSPs)
chr4 (462-712)||(49946161-49946411)
[»] chr6 (2 HSPs)
chr6 (456-712)||(16728764-16729020)
chr6 (23-132)||(16728135-16728244)


Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 456 - 712
Target Start/End: Complemental strand, 14240453 - 14240197
Alignment:
Q  456 gcttaaataacttcaaatctcgttctgcacagaccggagtagcgccaccggagatggacaacgaaacaatctcccgcatcgtaacagaaatctccgacct 555  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14240453 gcttcaataacttcaaatctcgttctgcacagaccggagtagcgccaccggagatggacgacgaaacaatctcccgcatcgtaacagaaatctccgacct 14240354  T
Q  556 ccgcgaaacccaccacaccgaaaatccacaaccactctccgaacaatccctctcttctctccaaaccctcctcaaccattcccagcctttagacccactc 655  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14240353 ccgcgaaacccaccacaccgaaaatccacaaccactctccgaacaatccctctcttctctccaaaccctcctcaaccattcccaacctttagacccactc 14240254  T
Q  656 tacgacgccgtttcaccttcccacctaattcccccaatcgccaccgcaatggattca 712  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14240253 tacgacgccgtttcaccttcccacctaattcccccaatcgccaccgcaatggattca 14240197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 266 - 428
Target Start/End: Complemental strand, 14240643 - 14240481
Alignment:
Q  266 cacatgaacattttatcattcttaatatcaaggattaaaataactaaaaagatcgaagataatttaactgattttaattgaagtttaggatcattatgac 365  Q
    ||||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14240643 cacatcaacattttatcattattaatgtcaaggattaaaataactaaaaagattgaagataatttaactgattttaattgaagtttaggatcattatgac 14240544  T
Q  366 aacaacacattaagctcctaaaatgatggtttgctcttgttttcactttcccaaagcgggaac 428  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14240543 aactacacattaagctcctaaaatgatggtttgctcttgttttcactttcccaaagcgggaac 14240481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 235; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 462 - 712
Target Start/End: Original strand, 49946161 - 49946411
Alignment:
Q  462 ataacttcaaatctcgttctgcacagaccggagtagcgccaccggagatggacaacgaaacaatctcccgcatcgtaacagaaatctccgacctccgcga 561  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  49946161 ataacttcaaatctcgttctgcacagaccggagtagcgccaccggagatggacgacgaaacaatctcccgcatcgtaacagaaatctccgacctccgcga 49946260  T
Q  562 aacccaccacaccgaaaatccacaaccactctccgaacaatccctctcttctctccaaaccctcctcaaccattcccagcctttagacccactctacgac 661  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  49946261 aacccaccacaccgaaaatccacaaccactctccgaacaatccctctcttctctccaaaccctcctcaaccattcccaacctttagacccactctacgac 49946360  T
Q  662 gccgtttcaccttcccacctaattcccccaatcgccaccgcaatggattca 712  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  49946361 gccgtttcaccttcccacctaattcccccaatcgacaccacaatggattca 49946411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 456 - 712
Target Start/End: Original strand, 16728764 - 16729020
Alignment:
Q  456 gcttaaataacttcaaatctcgttctgcacagaccggagtagcgccaccggagatggacaacgaaacaatctcccgcatcgtaacagaaatctccgacct 555  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||    
T  16728764 gcttcaataacttcaaatctcgttctgcacagaccggagtagcgccaccggagatggacgacgaaacaatctcccgcattataacagaaatctccgacct 16728863  T
Q  556 ccgcgaaacccaccacaccgaaaatccacaaccactctccgaacaatccctctcttctctccaaaccctcctcaaccattcccagcctttagacccactc 655  Q
     ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  16728864 acgcgaaacccaccacactgaaaatccacaaccactctccgaaaaatccctctcttctctccaaaccctcctaaaccattcccaacctttagacccactc 16728963  T
Q  656 tacgacgccgtttcaccttcccacctaattcccccaatcgccaccgcaatggattca 712  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16728964 tacgacgccgtttcaccttcccacctaattcccccaatcgacaccgcaatggattca 16729020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 16728135 - 16728244
Alignment:
Q  23 gcaaggtatcatcacagtcaacaacaaacaactcaagcacttacaaacaatcactctcacaaataatatagctaaagcctctagtgcaacaaaaatcaaa 122  Q
    |||||||||  ||||  |||||||||||||||||||    || ||| ||||||||||||||||||||||||||| ||||| | ||||||||| | |||||    
T  16728135 gcaaggtatggtcacgatcaacaacaaacaactcaattgtttccaagcaatcactctcacaaataatatagctatagcctttggtgcaacaagattcaaa 16728234  T
Q  123 gattcatgaa 132  Q
     | |||||||    
T  16728235 aactcatgaa 16728244  T

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