View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1929_high_14 (Length: 344)
Name: NF1929_high_14
Description: NF1929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1929_high_14 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 29196611 - 29196954
Alignment:
| Q |
1 |
ccaaacgccgacgccaatgcccacgacaaactcccggtattcaccgctttcacaaacaaataaaacgtcaacaacaacgcaaatatcgccactccttcat |
100 |
Q |
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| T |
29196611 |
ccaaacgccgacgccaatgcccacgacaaactcccggtattcaccgctttcacaaacaaataaaacgtcaacaacaacgcaaatatcgccactccttcat |
29196710 |
T |
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| Q |
101 |
tatcataagatccagcaacagatctcgatatataacccggacaaatcgcgatcaatgcagcggcgacaatccccgcgccagaatcccatatttctttacc |
200 |
Q |
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| T |
29196711 |
tatcataagatccagcaacagatcttgatatataacccggacaaatcgcgatcaatgcagcggcgacaatccccgcgccagaatcccatatttctttacc |
29196810 |
T |
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| Q |
201 |
gaaaaaatacgctacaatcgtagtattcgacgcgaaaaatggtgctgtaagaacacaaacttcacgaatatgaactgcaaatctgagaaaatggagaatt |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29196811 |
gaaaaaatacgctacaatggtagtattcgacgcgaaaaatggtgctgtaagaacacaaacttcacgaatatgaactgcaaatctgagaaaatggagaatt |
29196910 |
T |
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| Q |
301 |
ttgtataatccagcagcagtgagcattaaaccggggtaaagtgt |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29196911 |
ttgtataatccagcagcagtgagcattaaaccggggtaaagtgt |
29196954 |
T |
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