View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1929_high_21 (Length: 284)
Name: NF1929_high_21
Description: NF1929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1929_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 31887506 - 31887354
Alignment:
| Q |
9 |
agcacagaaacaacaaagtgtggagtaatattgtggaaactactcaacagattggaacacgtgcggaggcttttctaagtagctggaagaatgcaaaaga |
108 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31887506 |
agcacagaaacaacaaagtgtggaataatattgtggaaactactcaacagattggaacacgcacggaggcttttctaagtagctggaagaatgcaaaaga |
31887407 |
T |
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| Q |
109 |
aaccagaactcaaactactactccttccacgcatactgatatagataaatgga |
161 |
Q |
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| T |
31887406 |
tacccgaaatcaaactaccactccttccacgcatactgatatagataaatgga |
31887354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 161 - 270
Target Start/End: Complemental strand, 31887253 - 31887144
Alignment:
| Q |
161 |
aaactttgtaataggacagactacatgggtccaattaccatccctaaatcacaccatttgaaattatcctatatctctagttgaaattgtatcttggatg |
260 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31887253 |
aaactttgtaataggacggactacatgggtccaattaccatctctaaatcacaccatccgaaattatcctatatctctagttgaaattgtatcttggatg |
31887154 |
T |
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| Q |
261 |
agattgagtt |
270 |
Q |
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|||||||||| |
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| T |
31887153 |
agattgagtt |
31887144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 25737055 - 25737144
Alignment:
| Q |
9 |
agcacagaaacaacaaagtgtggagtaatattgtggaaactactcaacagattggaacacgtgcggaggcttttctaagtagctggaaga |
98 |
Q |
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|||||||||||||||||||||||| |||| ||||||| ||||||||||| |||||| ||| | |||||||||||||||||||||||||| |
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| T |
25737055 |
agcacagaaacaacaaagtgtggaataatgttgtggagactactcaacatattggagcacacgtggaggcttttctaagtagctggaaga |
25737144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 20863543 - 20863640
Alignment:
| Q |
14 |
agaaacaacaaagtgtggagtaatattgtggaaactactcaacagattggaacacgtgcggaggcttttctaagtagctggaagaatgcaaaagaaac |
111 |
Q |
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||||| ||||||||||||| ||| ||||||||||||||||||||||||| | || ||| ||| |||||| |||||||||| |||||| ||||||| |
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| T |
20863543 |
agaaaaaacaaagtgtggaacaatgttgtggaaactactcaacagattggtgctcgcgcgaaggattttctgagtagctggatgaatgcgcaagaaac |
20863640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 44785309 - 44785369
Alignment:
| Q |
9 |
agcacagaaacaacaaagtgtggagtaatattgtggaaactactcaacagattggaacacg |
69 |
Q |
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|||| |||||||| ||| |||||| |||| || ||||||||||||||||||||||| |||| |
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| T |
44785309 |
agcagagaaacaataaattgtggaataatgttatggaaactactcaacagattggagcacg |
44785369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 12702569 - 12702523
Alignment:
| Q |
17 |
aacaacaaagtgtggagtaatattgtggaaactactcaacagattgg |
63 |
Q |
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|||||||||||||||| ||||||||| ||||| ||||| |||||||| |
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| T |
12702569 |
aacaacaaagtgtggaataatattgtagaaacaactcagcagattgg |
12702523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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