View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1929_high_26 (Length: 240)

Name: NF1929_high_26
Description: NF1929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1929_high_26
NF1929_high_26
[»] chr7 (12 HSPs)
chr7 (5-225)||(46281234-46281458)
chr7 (97-161)||(5620217-5620281)
chr7 (101-161)||(22388031-22388091)
chr7 (113-161)||(30133934-30133982)
chr7 (101-159)||(28844371-28844429)
chr7 (111-161)||(34922839-34922889)
chr7 (104-161)||(753334-753391)
chr7 (100-161)||(5630041-5630102)
chr7 (108-161)||(7100751-7100804)
chr7 (105-161)||(2221848-2221904)
chr7 (125-161)||(27481445-27481481)
chr7 (101-161)||(31341077-31341137)
[»] chr5 (23 HSPs)
chr5 (101-161)||(26516181-26516241)
chr5 (101-161)||(20982262-20982322)
chr5 (93-161)||(40335990-40336058)
chr5 (95-161)||(39257507-39257573)
chr5 (104-157)||(23999043-23999096)
chr5 (125-161)||(30585330-30585366)
chr5 (101-161)||(31687908-31687968)
chr5 (102-161)||(6938843-6938902)
chr5 (101-160)||(37063201-37063260)
chr5 (107-161)||(28981889-28981943)
chr5 (97-158)||(912990-913051)
chr5 (108-161)||(6725120-6725173)
chr5 (101-161)||(3951501-3951560)
chr5 (125-161)||(4855596-4855632)
chr5 (125-161)||(6593182-6593218)
chr5 (101-161)||(8471992-8472052)
chr5 (97-161)||(11790866-11790930)
chr5 (101-161)||(12242005-12242065)
chr5 (105-161)||(14331237-14331293)
chr5 (101-161)||(14716597-14716657)
chr5 (101-161)||(29588764-29588823)
chr5 (101-161)||(32172536-32172596)
chr5 (101-161)||(41052773-41052833)
[»] chr6 (17 HSPs)
chr6 (98-161)||(2785792-2785855)
chr6 (104-161)||(4247214-4247271)
chr6 (102-161)||(14340931-14340990)
chr6 (101-161)||(7713908-7713968)
chr6 (97-161)||(21919957-21920021)
chr6 (101-157)||(32975865-32975921)
chr6 (102-161)||(2767796-2767855)
chr6 (104-159)||(9833227-9833282)
chr6 (125-159)||(4003751-4003785)
chr6 (101-161)||(3155059-3155119)
chr6 (125-161)||(4046203-4046239)
chr6 (107-151)||(8349797-8349841)
chr6 (125-161)||(9041568-9041604)
chr6 (97-161)||(24631981-24632044)
chr6 (101-161)||(33068688-33068748)
chr6 (119-159)||(33301596-33301636)
chr6 (101-161)||(33828529-33828589)
[»] chr4 (13 HSPs)
chr4 (104-161)||(33640991-33641048)
chr4 (95-161)||(485964-486030)
chr4 (104-161)||(4243223-4243281)
chr4 (102-159)||(40709508-40709565)
chr4 (101-157)||(19304815-19304871)
chr4 (104-160)||(22684646-22684702)
chr4 (101-161)||(24193468-24193528)
chr4 (97-147)||(4471068-4471118)
chr4 (107-161)||(36461955-36462009)
chr4 (103-160)||(18512548-18512605)
chr4 (104-161)||(23676599-23676656)
chr4 (125-161)||(8422988-8423024)
chr4 (101-161)||(24443921-24443981)
[»] chr8 (18 HSPs)
chr8 (109-157)||(6950223-6950271)
chr8 (101-161)||(41336772-41336832)
chr8 (102-156)||(35453751-35453805)
chr8 (101-162)||(12972738-12972799)
chr8 (101-161)||(8536175-8536235)
chr8 (101-160)||(5226486-5226545)
chr8 (102-161)||(31875687-31875746)
chr8 (102-157)||(34563137-34563192)
chr8 (127-161)||(44865718-44865752)
chr8 (101-162)||(2107453-2107514)
chr8 (125-162)||(7008511-7008548)
chr8 (104-161)||(10722514-10722571)
chr8 (97-161)||(7026614-7026678)
chr8 (101-145)||(8578521-8578565)
chr8 (101-161)||(14482085-14482145)
chr8 (101-161)||(27754560-27754620)
chr8 (101-161)||(31884477-31884537)
chr8 (101-161)||(35869720-35869780)
[»] chr2 (8 HSPs)
chr2 (101-161)||(4550660-4550720)
chr2 (125-161)||(5752751-5752787)
chr2 (102-161)||(33197367-33197426)
chr2 (98-161)||(40851478-40851541)
chr2 (104-161)||(6561250-6561307)
chr2 (104-161)||(42974235-42974292)
chr2 (125-161)||(9477862-9477898)
chr2 (125-161)||(32098462-32098498)
[»] chr1 (9 HSPs)
chr1 (106-161)||(48133071-48133126)
chr1 (104-157)||(49173292-49173345)
chr1 (101-161)||(49365915-49365975)
chr1 (102-161)||(14128599-14128658)
chr1 (103-162)||(52542446-52542505)
chr1 (128-161)||(16322725-16322758)
chr1 (101-162)||(29794049-29794110)
chr1 (101-161)||(24263266-24263326)
chr1 (97-161)||(46980252-46980315)
[»] scaffold0590 (1 HSPs)
scaffold0590 (101-159)||(1201-1259)
[»] scaffold0275 (1 HSPs)
scaffold0275 (101-159)||(2716-2774)
[»] chr3 (11 HSPs)
chr3 (102-160)||(44240047-44240105)
chr3 (101-161)||(21574375-21574435)
chr3 (125-161)||(37308216-37308252)
chr3 (125-161)||(50399506-50399542)
chr3 (97-161)||(51130619-51130683)
chr3 (91-161)||(27294239-27294309)
chr3 (125-163)||(34857392-34857430)
chr3 (101-162)||(2621044-2621105)
chr3 (125-161)||(3776781-3776817)
chr3 (125-161)||(23785136-23785172)
chr3 (125-165)||(29427768-29427808)
[»] scaffold0085 (1 HSPs)
scaffold0085 (108-161)||(26175-26228)
[»] scaffold0024 (1 HSPs)
scaffold0024 (101-161)||(27459-27519)
[»] scaffold0091 (1 HSPs)
scaffold0091 (101-160)||(5903-5962)
[»] scaffold0116 (1 HSPs)
scaffold0116 (103-161)||(18122-18182)
[»] scaffold0110 (1 HSPs)
scaffold0110 (125-161)||(34063-34099)


Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 46281234 - 46281458
Alignment:
Q  5 tttttgttatagaaataacttacataagtaacgtgagacattaggtggtttggggtgctaacattgtctatttcnnnnnnnnnnnngaaacatatgcata 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||    
T  46281234 tttttgttatagaaataacttacataagtaacgtgagacattaggtggtttggggtgctaacattgtctatttcaaaaacaaaaaagaaacatatgcata 46281333  T
Q  105 agcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaaatggctgtattctccatgtaatacacat----atacattcctg 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    |||||||||||    
T  46281334 agcacttatatgaaaagcggttatgctataagcagttaattgagttgtttatccaaaaaggctgtattctccatgtaatacacatatacatacattcctg 46281433  T
Q  201 ttatataattgcaattatgcattat 225  Q
    |||||||||||||||||||| ||||    
T  46281434 ttatataattgcaattatgcgttat 46281458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 5620217 - 5620281
Alignment:
Q  97 tatgcataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||||||||||||||| | | ||  ||| |||||||| | ||||||||||||||||||||||    
T  5620217 tatgcataagcacttatataatatgcacttaggctataagaacttaattaagttgtttatccaaa 5620281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 22388031 - 22388091
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||||||| |||| ||| | ||||| |||||||  ||||||||||||||||||||||    
T  22388031 cataagcacttaaatgataagtgtttatgttataagcgcttaattaagttgtttatccaaa 22388091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 30133982 - 30133934
Alignment:
Q  113 tatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||| ||||| |||||||||||||| |||||| |||||||||||||||    
T  30133982 tatgataagcgcttatgctataagcatttaattgagttgtttatccaaa 30133934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 28844429 - 28844371
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatcca 159  Q
    ||||||||||||||  | ||||| ||||||||||| || ||||||||||||| ||||||    
T  28844429 cataagcacttatacaataagcgcttatgctataaacacttaattaagttgtatatcca 28844371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 34922889 - 34922839
Alignment:
Q  111 tatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||| ||||  ||||||||||||  |||||||||||||||||||||||    
T  34922889 tatatgacaagcacttatgctataagaggttaattaagttgtttatccaaa 34922839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 753334 - 753391
Alignment:
Q  104 aagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||| ||||||||| ||  | ||||||||||| || ||||||||||||||||||||||    
T  753334 aagcgcttatatgataaatgtttatgctataaacacttaattaagttgtttatccaaa 753391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 5630041 - 5630102
Alignment:
Q  100 gcataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||| |||||||||| || |  |||| ||||||| | ||||||||||||||||||||||    
T  5630041 gcataagtacttatatgataaacacttattctataaggacttaattaagttgtttatccaaa 5630102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 7100751 - 7100804
Alignment:
Q  108 acttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||||| || || |||| ||||||||| |||||||||| |||||||||||    
T  7100751 acttatatgataaacgcttatactataagcatttaattaagtagtttatccaaa 7100804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 2221904 - 2221848
Alignment:
Q  105 agcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||| ||||  ||||| ||||||||||||   ||||||||||||||||||||||    
T  2221904 agcacttttatggtaagcgcttatgctataagtgtttaattaagttgtttatccaaa 2221848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 27481445 - 27481481
Alignment:
Q  125 ttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||||||||||  |||||||||||||||||||||    
T  27481445 ttatgctataagcacctaattaagttgtttatccaaa 27481481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 31341137 - 31341077
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||| ||| |||| ||||| |||||| ||||||  || |||||||||||||||||||    
T  31341137 cataagcatttagatgataagcgcttatgcaataagcgcttgattaagttgtttatccaaa 31341077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 26516241 - 26516181
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||||||||||||| ||||| |||||||||||||  ||||||||||||||||||||||    
T  26516241 cataagcacttatatgataagcgcttatgctataagcgcttaattaagttgtttatccaaa 26516181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 20982262 - 20982322
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||||||||||||| ||||  |||||||||||||| ||||| ||||||||||||||||    
T  20982262 cataagcacttatatgataagcacttatgctataagcacttaatgaagttgtttatccaaa 20982322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 40335990 - 40336058
Alignment:
Q  93 aacatatgcataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||| |||||||||||||||||| | | | | ||||||||||||  |||||||||||||||||||||    
T  40335990 aacatacgcataagcacttatatgacaggagctcatgctataagcacataattaagttgtttatccaaa 40336058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 39257507 - 39257573
Alignment:
Q  95 catatgcataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||| |||||||||||| |||| ||  | |||||||||||||  ||||||||||||||||||||||    
T  39257507 catatacataagcacttacatgataatagtttatgctataagcgcttaattaagttgtttatccaaa 39257573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 23999096 - 23999043
Alignment:
Q  104 aagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatc 157  Q
    |||||||||||||| ||||  |||| ||||||||| ||||||||||||||||||    
T  23999096 aagcacttatatgataagcccttattctataagcatttaattaagttgtttatc 23999043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 30585366 - 30585330
Alignment:
Q  125 ttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||||||||| ||||||||||||||||||||||    
T  30585366 ttatgctataagcaattaattaagttgtttatccaaa 30585330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 31687968 - 31687908
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||||||||||||| |||||  ||||||||||||| |||||| || || |||||||||    
T  31687968 cataagcacttatatgataagcgcctatgctataagcatttaatttagctggttatccaaa 31687908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 6938843 - 6938902
Alignment:
Q  102 ataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||| ||||||||| ||||| ||||||||||||| | |||||||  ||||||||||||    
T  6938843 ataagcccttatatgataagcgtttatgctataagctgataattaaactgtttatccaaa 6938902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 37063201 - 37063260
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaa 160  Q
    |||||||| |||||||| ||||  |||||||||||| |||| |||||| |||||||||||    
T  37063201 cataagcatttatatgacaagcatttatgctataagtagttgattaagctgtttatccaa 37063260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 28981943 - 28981889
Alignment:
Q  107 cacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||||||| || || |||||||||||||| |||||||||||  |||||||||    
T  28981943 cacttatatgataaacgtttatgctataagcaattaattaagttacttatccaaa 28981889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 912990 - 913051
Alignment:
Q  97 tatgcataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatcc 158  Q
    |||| ||||| |||||||||| ||| | ||||  |||||||| |||||||||||||||||||    
T  912990 tatgtataagtacttatatgataagtgtttatagtataagcatttaattaagttgtttatcc 913051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 6725173 - 6725120
Alignment:
Q  108 acttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||||| ||||  |||||||||||||| |||||||| || ||||||||||    
T  6725173 acttatatgataagcacttatgctataagcacttaattaaattatttatccaaa 6725120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 3951560 - 3951501
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||||||||||||| ||||  ||||||||||| |  ||||||||||| ||||||||||    
T  3951560 cataagcacttatatgataagcatttatgctataa-cgcttaattaagttatttatccaaa 3951501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 4855632 - 4855596
Alignment:
Q  125 ttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||||||| | ||||||||||||||||||||||    
T  4855632 ttatgctataagtatttaattaagttgtttatccaaa 4855596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 6593218 - 6593182
Alignment:
Q  125 ttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||||||||| || ||||||||||||||||||||    
T  6593218 ttatgctataagctgtaaattaagttgtttatccaaa 6593182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 8472052 - 8471992
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||| || |||||||| ||| | |||||||| ||||| ||||||| ||||||||||||||    
T  8472052 cataaacatttatatgataagtgcttatgctaaaagcatttaattacgttgtttatccaaa 8471992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 11790930 - 11790866
Alignment:
Q  97 tatgcataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||||||||||||||||| || |  ||||| || ||||||||||||||| | |||| |||||    
T  11790930 tatgcataagcacttatatgataaacacttatgttacaagcagttaattaagctatttacccaaa 11790866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 12242005 - 12242065
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||| ||||||||||| ||||  ||| |||| || || ||||||||||||||||||||||    
T  12242005 cataaccacttatatgataagcacttaagctagaatcacttaattaagttgtttatccaaa 12242065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 14331293 - 14331237
Alignment:
Q  105 agcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||||||| | ||  |||||||||||||||| ||| | ||||||||||||||||    
T  14331293 agcacttatatcataattggttatgctataagcacttactcaagttgtttatccaaa 14331237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 14716597 - 14716657
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||||||||||||| ||    |||||||||||||| ||||||||| ||| ||||||||    
T  14716597 cataagcacttatatgacaaatccttatgctataagcacttaattaagctgtatatccaaa 14716657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 29588823 - 29588764
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||||||||||| ||||| | |||||||||||||  |||||| | |||||||||||||    
T  29588823 cataagcacttatataaaaagtgtttatgctataagcgcttaatt-atttgtttatccaaa 29588764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 32172596 - 32172536
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||| ||| ||||| ||||| ||||||| |||||  ||||||| ||||||||||||||    
T  32172596 cataagctcttgtatgataagcgcttatgctgtaagcgcttaattatgttgtttatccaaa 32172536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 41052833 - 41052773
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||||| | | ||| ||||| |||||||| ||||| |||||||| |||||||||||||    
T  41052833 cataagcacctgtctgataagcgtttatgctacaagcacttaattaaattgtttatccaaa 41052773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 2785792 - 2785855
Alignment:
Q  98 atgcataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||||||| ||||||| ||||| |||||||||||||  ||||||||||||||||||||||    
T  2785792 atgcataagcacatatatgacaagcgtttatgctataagcgattaattaagttgtttatccaaa 2785855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 4247214 - 4247271
Alignment:
Q  104 aagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||||||||| |||   |||||||||||||| ||||||||||||||||||||||    
T  4247214 aagcacttatatgataagtacttatgctataagcacttaattaagttgtttatccaaa 4247271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 14340931 - 14340990
Alignment:
Q  102 ataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||| ||||||||||| ||| | ||||| |||||||| ||||||||||||||||||||||    
T  14340931 ataaacacttatatgataagtgtttatgttataagcacttaattaagttgtttatccaaa 14340990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 7713968 - 7713908
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||| ||||||||| | | ||||||||||||||||  |||||||||| ||||||||||    
T  7713968 cataagctcttatatgataggtggttatgctataagcacgtaattaagttctttatccaaa 7713908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 21920021 - 21919957
Alignment:
Q  97 tatgcataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||||||||||||||||| |||   |||||||||||||  |||||||||||  |||||||||    
T  21920021 tatgcataagcacttatatgataagtacttatgctataagcgcttaattaagtttcttatccaaa 21919957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 32975921 - 32975865
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatc 157  Q
    ||||| ||||||||||| ||||| ||||||||||| |  ||||||||||||||||||    
T  32975921 cataaacacttatatgagaagcgcttatgctataaacgcttaattaagttgtttatc 32975865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 2767796 - 2767855
Alignment:
Q  102 ataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||| ||||||||| ||||| ||||||||||||   |||| |||||||||||||||||    
T  2767796 ataagcccttatatgagaagcgtttatgctataagggcttaaataagttgtttatccaaa 2767855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 9833227 - 9833282
Alignment:
Q  104 aagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatcca 159  Q
    |||||||||||||| || || ||||| ||||| || ||||||||||||||||||||    
T  9833227 aagcacttatatgataaacgcttatgttataaacacttaattaagttgtttatcca 9833282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 159
Target Start/End: Original strand, 4003751 - 4003785
Alignment:
Q  125 ttatgctataagcagttaattaagttgtttatcca 159  Q
    |||||||||||||| ||||||||||||||||||||    
T  4003751 ttatgctataagcacttaattaagttgtttatcca 4003785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 3155119 - 3155059
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||| || |||||||| || || |||||||||||||  |||| |||||||||||||||||    
T  3155119 cataaccatttatatgataaacgcttatgctataagcgcttaaataagttgtttatccaaa 3155059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 4046203 - 4046239
Alignment:
Q  125 ttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  4046203 ttatggtataagcatttaattaagttgtttatccaaa 4046239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 8349797 - 8349841
Alignment:
Q  107 cacttatatgaaaagcggttatgctataagcagttaattaagttg 151  Q
    ||||||||||| ||| |||||||||||||||  ||||||||||||    
T  8349797 cacttatatgataagtggttatgctataagcgcttaattaagttg 8349841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 9041568 - 9041604
Alignment:
Q  125 ttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||||||||  ||||||||||||||||||||||    
T  9041568 ttatgctataagcgcttaattaagttgtttatccaaa 9041604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 24631981 - 24632044
Alignment:
Q  97 tatgcataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||||||||||||||||| ||||| ||||  |||||  | |||||||||||| |||||||||    
T  24631981 tatgcataagcacttatatgataagcgtttatcttataa-tatttaattaagttgcttatccaaa 24632044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 33068688 - 33068748
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||| |||| ||| ||||| ||||||||||| || ||||||||| |||| |||||||    
T  33068688 cataagcatttatttgataagcgcttatgctataaacacttaattaagctgttcatccaaa 33068748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 33301596 - 33301636
Alignment:
Q  119 aagcggttatgctataagcagttaattaagttgtttatcca 159  Q
    ||||| |||||||||||||| | ||||||||||||||||||    
T  33301596 aagcgtttatgctataagcaatcaattaagttgtttatcca 33301636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 33828589 - 33828529
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||| ||||||| |||| ||||| |||||||||||||| ||| ||||  ||||||||||||    
T  33828589 catatgcacttaaatgataagcgtttatgctataagcacttagttaaactgtttatccaaa 33828529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 33641048 - 33640991
Alignment:
Q  104 aagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||||||||| ||||| |||| ||||||||| ||||||||| ||||||||||||    
T  33641048 aagcacttatatgataagcgattattctataagcacttaattaagctgtttatccaaa 33640991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 486030 - 485964
Alignment:
Q  95 catatgcataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||| ||||||||||| ||||| ||||| |||||||||||||  |||||||||| ||| |||||||    
T  486030 catatacataagcacttttatgataagcgcttatgctataagcgcttaattaagtagttcatccaaa 485964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 4243281 - 4243223
Alignment:
Q  104 aagcacttatatgaaaagcggttatgcta-taagcagttaattaagttgtttatccaaa 161  Q
    |||||||||||||| ||||| |||||||| |||||| ||||||||| ||||||||||||    
T  4243281 aagcacttatatgataagcgcttatgctaataagcacttaattaagctgtttatccaaa 4243223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 40709508 - 40709565
Alignment:
Q  102 ataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatcca 159  Q
    ||||||||||||||   ||| ||||||| |||||||| ||||||||||||||||||||    
T  40709508 ataagcacttatatattaagtggttatgatataagcacttaattaagttgtttatcca 40709565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 19304871 - 19304815
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatc 157  Q
    ||||||||||||||||| ||||| ||||   ||||||| ||||||||||||||||||    
T  19304871 cataagcacttatatgagaagcgtttatagcataagcatttaattaagttgtttatc 19304815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 22684646 - 22684702
Alignment:
Q  104 aagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaa 160  Q
    ||||| |||||||| |||||  |||| |||||||| |||||||||||||||||||||    
T  22684646 aagcatttatatgataagcgcatatggtataagcaattaattaagttgtttatccaa 22684702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 24193528 - 24193468
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||| |||||||||| ||||| ||||||||||||   | ||||||||||||||||||||    
T  24193528 cataagtacttatatgataagcgtttatgctataagtgctcaattaagttgtttatccaaa 24193468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 4471118 - 4471068
Alignment:
Q  97 tatgcataagcacttatatgaaaagcggttatgctataagcagttaattaa 147  Q
    ||||||||||||||||||| | ||  | |||||||||||||||||||||||    
T  4471118 tatgcataagcacttatataataattgcttatgctataagcagttaattaa 4471068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 36462009 - 36461955
Alignment:
Q  107 cacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||||||| ||| |||||||||||||||  ||| |||||||| |||||||||    
T  36462009 cacttatatgataagtggttatgctataagcgcttatttaagttggttatccaaa 36461955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 18512548 - 18512605
Alignment:
Q  103 taagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaa 160  Q
    ||||| ||||||||| ||  | |||||||||||||| |||||||||||| ||||||||    
T  18512548 taagctcttatatgataaatgtttatgctataagcacttaattaagttgcttatccaa 18512605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 23676656 - 23676599
Alignment:
Q  104 aagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||||||||| ||||  ||| |||||||||| ||| |||| |||||||||||||    
T  23676656 aagcacttatatgacaagcatttaagctataagcacttagttaaattgtttatccaaa 23676599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 8422988 - 8423024
Alignment:
Q  125 ttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||||||| || ||||||||||||||||||||||    
T  8422988 ttatgctataaacacttaattaagttgtttatccaaa 8423024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 24443981 - 24443921
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||| |||||||||| ||| | |||||||||||||  ||||| ||||||| ||||||||    
T  24443981 cataagaacttatatgataagtgcttatgctataagcgcttaataaagttgtgtatccaaa 24443921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 6950271 - 6950223
Alignment:
Q  109 cttatatgaaaagcggttatgctataagcagttaattaagttgtttatc 157  Q
    ||||||||| ||||| |||||||||||||| ||||||||||||||||||    
T  6950271 cttatatgataagcgtttatgctataagcacttaattaagttgtttatc 6950223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 41336772 - 41336832
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||| |||| ||| || || |||||||||||||| ||||||||||||||||||||||    
T  41336772 cataagcatttatttgataaacgcttatgctataagcaattaattaagttgtttatccaaa 41336832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 35453751 - 35453805
Alignment:
Q  102 ataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttat 156  Q
    ||||| |||||||||| ||||| ||||||||||| || |||||||||||||||||    
T  35453751 ataagtacttatatgacaagcgcttatgctataatcacttaattaagttgtttat 35453805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 12972799 - 12972738
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaaa 162  Q
    ||||||||||||||||| ||  | |||||||||||||  ||||||||||||||| |||||||    
T  12972799 cataagcacttatatgataaatgcttatgctataagcgcttaattaagttgtttgtccaaaa 12972738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 8536175 - 8536235
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||||||||||||| ||||  | ||| |||||||| | ||||||||||||||||||||    
T  8536175 cataagcacttatatgacaagcattcatggtataagcactcaattaagttgtttatccaaa 8536235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 5226545 - 5226486
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaa 160  Q
    ||||| ||||||||||| ||  | ||||||||||| ||||| ||||||||||||||||||    
T  5226545 cataaacacttatatgataaatgtttatgctataaacagttgattaagttgtttatccaa 5226486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 31875687 - 31875746
Alignment:
Q  102 ataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||||||||||| ||||| ||||||||||| |  || |||||||||| ||||||||    
T  31875687 ataagcacttatatgataagcgcttatgctataaacgcttcattaagttgtctatccaaa 31875746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 34563192 - 34563137
Alignment:
Q  102 ataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatc 157  Q
    |||||||||||||||| ||  | |||||||||||||  ||||||||||||||||||    
T  34563192 ataagcacttatatgataaatgtttatgctataagcgtttaattaagttgtttatc 34563137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 161
Target Start/End: Original strand, 44865718 - 44865752
Alignment:
Q  127 atgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||||||| ||||||||||||||||||||||    
T  44865718 atgctataagcatttaattaagttgtttatccaaa 44865752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 2107453 - 2107514
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaaa 162  Q
    |||||| |||||||||| |||||  || ||||||| |  |||||||||||||||||||||||    
T  2107453 cataagaacttatatgataagcgcataagctataaacgcttaattaagttgtttatccaaaa 2107514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 7008548 - 7008511
Alignment:
Q  125 ttatgctataagcagttaattaagttgtttatccaaaa 162  Q
    |||||||||||||  |||||||||||||||||||||||    
T  7008548 ttatgctataagcgcttaattaagttgtttatccaaaa 7008511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 10722571 - 10722514
Alignment:
Q  104 aagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||||||||| | | | ||||||| |||||  ||||||||||||||||||||||    
T  10722571 aagcacttatatgatatgtgtttatgctttaagcgcttaattaagttgtttatccaaa 10722514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 7026678 - 7026614
Alignment:
Q  97 tatgcataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||||||||||||||||| ||  | ||||||| |||    ||||||||||||||||||||||    
T  7026678 tatgcataagcacttatatgataaatgtttatgctgtaaatgcttaattaagttgtttatccaaa 7026614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 8578565 - 8578521
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaatt 145  Q
    ||||||||||||||||| ||| | |||||||||||||| ||||||    
T  8578565 cataagcacttatatgataagtgcttatgctataagcatttaatt 8578521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 14482145 - 14482085
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||||||||||||| ||||  | |||||||||| | |||||||| |||||||| ||||    
T  14482145 cataagcacttatatgataagcactaatgctataagaacttaattaaattgtttattcaaa 14482085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 27754560 - 27754620
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||||||| |||| ||||| |||| |||||| || |||||||||||| ||| |||||    
T  27754560 cataagcacttaaatgataagcgtttatactataaacacttaattaagttgcttacccaaa 27754620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 31884537 - 31884477
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||| |||||| ||||| ||||| ||||||||||||   |||||| |||||||||||||||    
T  31884537 catatgcacttgtatgataagcgcttatgctataagtgcttaattgagttgtttatccaaa 31884477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 35869780 - 35869720
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||| |||||||||| ||| | |||||||||||||  ||||| ||||||| ||||||||    
T  35869780 cataagaacttatatgataagtgcttatgctataagcgcttaataaagttgtgtatccaaa 35869720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 4550720 - 4550660
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||||||||| ||| ||| | ||||||||||||  |||||||||||||||||||||||    
T  4550720 cataagcacttatgtgataagagattatgctataagttgttaattaagttgtttatccaaa 4550660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 5752751 - 5752787
Alignment:
Q  125 ttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||||||||||||||||||||||||||||||||    
T  5752751 ttatgctataagcagttaattaagttgtttatccaaa 5752787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 33197367 - 33197426
Alignment:
Q  102 ataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||||||||||| ||||| ||||| ||||||   |||||| |||||||||||||||    
T  33197367 ataagcacttatatgataagcgtttatgttataagtgtttaatttagttgtttatccaaa 33197426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 40851541 - 40851478
Alignment:
Q  98 atgcataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||||||| | | |||| ||||| ||||| |||||| | ||||||||||||||||||||||    
T  40851541 atgcataagcattaacatgacaagcgcttatgatataagtacttaattaagttgtttatccaaa 40851478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 6561307 - 6561250
Alignment:
Q  104 aagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||||||||| ||||  ||||||||||| || | |||| |||||||||||||||    
T  6561307 aagcacttatatgataagctcttatgctataaacactgaattcagttgtttatccaaa 6561250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 42974292 - 42974235
Alignment:
Q  104 aagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||| |||||| ||| | |||||||||||||  |||||||||||| |||||||||    
T  42974292 aagcactaatatgataagtgtttatgctataagctcttaattaagttgcttatccaaa 42974235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 9477898 - 9477862
Alignment:
Q  125 ttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||||||| || ||||||||||||||||||||||    
T  9477898 ttatgctataaacacttaattaagttgtttatccaaa 9477862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 32098462 - 32098498
Alignment:
Q  125 ttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||||||||| |||| |||||||||||||||||    
T  32098462 ttatgctataagcacttaagtaagttgtttatccaaa 32098498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 48133071 - 48133126
Alignment:
Q  106 gcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||||||| ||||| |||||||||||||  ||||||||||||| ||||||||    
T  48133071 gcacttatatgataagcgtttatgctataagcgcttaattaagttgtctatccaaa 48133126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 49173345 - 49173292
Alignment:
Q  104 aagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatc 157  Q
    |||||||||||||| ||| | ||||||||||||||  |||||||||||||||||    
T  49173345 aagcacttatatgagaagtgcttatgctataagcacataattaagttgtttatc 49173292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 49365915 - 49365975
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||||||||||| | || || |||||||||||||  |||| |||||||||||||||||    
T  49365915 cataagcacttatattataaacgtttatgctataagcgcttaactaagttgtttatccaaa 49365975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 14128599 - 14128658
Alignment:
Q  102 ataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||||||||||| |||   |||| ||||||||| ||| ||||||||||||||||||    
T  14128599 ataagcacttatatgataagtctttatactataagcatttatttaagttgtttatccaaa 14128658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 162
Target Start/End: Complemental strand, 52542505 - 52542446
Alignment:
Q  103 taagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaaa 162  Q
    ||||||||||||||| | | | ||||||||| |||  |||||||||||||||||||||||    
T  52542505 taagcacttatatgatacgtgcttatgctatcagcgcttaattaagttgtttatccaaaa 52542446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 16322758 - 16322725
Alignment:
Q  128 tgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||||||||| ||||||||||||||||||||||    
T  16322758 tgctataagcacttaattaagttgtttatccaaa 16322725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 29794049 - 29794110
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaaa 162  Q
    ||||| ||| |||||||||| |  |||||||||||||  ||||||||| |||||||||||||    
T  29794049 cataaacacatatatgaaaaacacttatgctataagcgcttaattaagctgtttatccaaaa 29794110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 24263266 - 24263326
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||| ||||||||||  || || |||||||||||||| ||||||||  ||||||||||||    
T  24263266 cataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 24263326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 46980252 - 46980315
Alignment:
Q  97 tatgcataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||| |||||||||||| ||  ||| |||||||||| | |||||| |||||||||||||||    
T  46980252 tatgcatatgcacttatatgataaatggt-atgctataagtacttaatttagttgtttatccaaa 46980315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 1201 - 1259
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatcca 159  Q
    ||||||||||||||||| |  || |||||||||||| | ||||||||||||||||||||    
T  1201 cataagcacttatatgatagacgtttatgctataagtacttaattaagttgtttatcca 1259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 2774 - 2716
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatcca 159  Q
    ||||||||||||||||| |  || |||||||||||| | ||||||||||||||||||||    
T  2774 cataagcacttatatgatagacgtttatgctataagtacttaattaagttgtttatcca 2716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 44240105 - 44240047
Alignment:
Q  102 ataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaa 160  Q
    |||||||||||||||| ||  | |||||||||||||| ||| |||||||||||||||||    
T  44240105 ataagcacttatatgataaatgattatgctataagcacttacttaagttgtttatccaa 44240047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 21574435 - 21574375
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||| |||||| |||| ||||| |||| ||||||||| |||||||||| |||||||||||    
T  21574435 cataaacacttacatgagaagcgtttatactataagcacttaattaagtagtttatccaaa 21574375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 37308216 - 37308252
Alignment:
Q  125 ttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||||||||| ||||||||||||||||||||||    
T  37308216 ttatgctataagcacttaattaagttgtttatccaaa 37308252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 50399506 - 50399542
Alignment:
Q  125 ttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||||||||| ||||||||||||||||||||||    
T  50399506 ttatgctataagcaattaattaagttgtttatccaaa 50399542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 51130683 - 51130619
Alignment:
Q  97 tatgcataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||||||||||  |||| ||||| |||||||| ||||| ||| ||||||| ||||||||||    
T  51130683 tatgcataagcacttgcatgataagcgtttatgctacaagcacttacttaagttctttatccaaa 51130619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 27294309 - 27294239
Alignment:
Q  91 gaaacatatgcataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    ||||| |||||||||||||||||| |  ||| | |||| |||||| | |||||||||| ||||||||||||    
T  27294309 gaaacttatgcataagcacttatacgttaagtgcttatactataaacggttaattaagctgtttatccaaa 27294239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 34857430 - 34857392
Alignment:
Q  125 ttatgctataagcagttaattaagttgtttatccaaaat 163  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  34857430 ttatgttataagcacttaattaagttgtttatccaaaat 34857392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 2621044 - 2621105
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaaa 162  Q
    |||||| |||||||| | ||| | |||||| ||||||| || ||||||||||||||||||||    
T  2621044 cataagtacttatattataagtgtttatgcaataagcatttcattaagttgtttatccaaaa 2621105  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 3776781 - 3776817
Alignment:
Q  125 ttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  3776781 ttatactataagcagtaaattaagttgtttatccaaa 3776817  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 23785172 - 23785136
Alignment:
Q  125 ttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  23785172 ttatgctataagcacttaattaagttgtttatgcaaa 23785136  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 29427768 - 29427808
Alignment:
Q  125 ttatgctataagcagttaattaagttgtttatccaaaatgg 165  Q
    ||||||||||||| ||  |||||||||||||||||||||||    
T  29427768 ttatgctataagccgtagattaagttgtttatccaaaatgg 29427808  T

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Target: scaffold0085 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 26175 - 26228
Alignment:
Q  108 acttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||||| ||| | |||||||||||||| ||||||||| ||||||||||||    
T  26175 acttatatgataagtgcttatgctataagcacttaattaaggtgtttatccaaa 26228  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 27519 - 27459
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||||||| |||| ||| | |||||||||||||  ||| ||||||||||||||||||    
T  27519 cataagcacttacatgataagagcttatgctataagcgtttatttaagttgtttatccaaa 27459  T

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Target: scaffold0091 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 5962 - 5903
Alignment:
Q  101 cataagcacttatatgaaaagcggttatgctataagcagttaattaagttgtttatccaa 160  Q
    ||||| ||||||||||| ||  | ||||||||||| ||||| ||||||||||||||||||    
T  5962 cataaacacttatatgataaatgtttatgctataaacagttgattaagttgtttatccaa 5903  T

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Target: scaffold0116 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 18122 - 18182
Alignment:
Q  103 taagcacttatatgaaaagcggttatgctataagcagttaat--taagttgtttatccaaa 161  Q
    |||||||||  |||||||||| |||||||||||||| |||||  ||||||| |||||||||    
T  18122 taagcacttcaatgaaaagcgcttatgctataagcacttaattataagttgattatccaaa 18182  T

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Target: scaffold0110 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 34063 - 34099
Alignment:
Q  125 ttatgctataagcagttaattaagttgtttatccaaa 161  Q
    |||||||||||||  ||||||||||||||||||||||    
T  34063 ttatgctataagctcttaattaagttgtttatccaaa 34099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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