View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1929_high_29 (Length: 224)

Name: NF1929_high_29
Description: NF1929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1929_high_29
NF1929_high_29
[»] chr2 (5 HSPs)
chr2 (13-205)||(43734845-43735037)
chr2 (99-145)||(43702735-43702781)
chr2 (99-145)||(43686235-43686281)
chr2 (99-145)||(43713559-43713605)
chr2 (99-145)||(43727461-43727507)
[»] chr4 (1 HSPs)
chr4 (99-169)||(2689835-2689905)
[»] scaffold0236 (1 HSPs)
scaffold0236 (99-145)||(24415-24461)
[»] chr1 (1 HSPs)
chr1 (99-145)||(25273261-25273307)


Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 43734845 - 43735037
Alignment:
Q  13 agaagcaaagggtgttggaaagcttcataagttggtacatagcttctcaagctattgctgtagttttttccatgacagcgataatctatatccaagatca 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43734845 agaatcaaagggtgttggaaagcttcataagttggtacatagcttctcaagctattgctgtagttttttccatgacagcgataatctatatccaagatca 43734944  T
Q  113 tcttggttggaaactaggttttggtgttccagctgccgttatgttcttgtcaactttgttgttcttccttgtttcgtcgcgttatgtcaagaa 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43734945 tcttggttggaaactaggttttggtgttccagctgccgttatgttcttgtcaactttgttgttcttccttgtttcgtcgcgttatgtcaagaa 43735037  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 43702735 - 43702781
Alignment:
Q  99 tatatccaagatcatcttggttggaaactaggttttggtgttccagc 145  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||    
T  43702735 tatatccaagatcatcttggttggaaagttggttttggtgttccagc 43702781  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 43686235 - 43686281
Alignment:
Q  99 tatatccaagatcatcttggttggaaactaggttttggtgttccagc 145  Q
    ||||||||||||||||||||||||| | | |||||||||||||||||    
T  43686235 tatatccaagatcatcttggttggagaattggttttggtgttccagc 43686281  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 43713559 - 43713605
Alignment:
Q  99 tatatccaagatcatcttggttggaaactaggttttggtgttccagc 145  Q
    ||||||||||||||||||||||||| | | |||||||||||||||||    
T  43713559 tatatccaagatcatcttggttggagaattggttttggtgttccagc 43713605  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 43727461 - 43727507
Alignment:
Q  99 tatatccaagatcatcttggttggaaactaggttttggtgttccagc 145  Q
    ||||||||||| ||||||||||||||| | |||||||||||||||||    
T  43727461 tatatccaagagcatcttggttggaaaattggttttggtgttccagc 43727507  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 2689835 - 2689905
Alignment:
Q  99 tatatccaagatcatcttggttggaaactaggttttggtgttccagctgccgttatgttcttgtcaacttt 169  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||| ||  |||||||||| || |||||    
T  2689835 tatatccaagatcatcttggatggaaacttggttttggtgttccagcagcacttatgttcttttccacttt 2689905  T

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Target: scaffold0236 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 24461 - 24415
Alignment:
Q  99 tatatccaagatcatcttggttggaaactaggttttggtgttccagc 145  Q
    ||||||||||||||||||||||||||| | |||||||| ||||||||    
T  24461 tatatccaagatcatcttggttggaaaattggttttggagttccagc 24415  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 25273261 - 25273307
Alignment:
Q  99 tatatccaagatcatcttggttggaaactaggttttggtgttccagc 145  Q
    ||||||||||||||||||||||||||| | |||||||| ||||||||    
T  25273261 tatatccaagatcatcttggttggaaaattggttttggagttccagc 25273307  T

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