View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1929_high_3 (Length: 620)

Name: NF1929_high_3
Description: NF1929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1929_high_3
NF1929_high_3
[»] chr3 (5 HSPs)
chr3 (4-606)||(39279353-39279954)
chr3 (359-444)||(8091254-8091340)
chr3 (387-427)||(8091140-8091180)
chr3 (390-444)||(22345797-22345851)
chr3 (373-427)||(38692796-38692850)
[»] chr2 (4 HSPs)
chr2 (192-475)||(31464721-31464992)
chr2 (44-151)||(31464995-31465102)
chr2 (377-427)||(14570514-14570564)
chr2 (377-421)||(44120354-44120398)
[»] chr8 (5 HSPs)
chr8 (373-432)||(9050043-9050102)
chr8 (367-448)||(40354465-40354545)
chr8 (373-450)||(6019549-6019626)
chr8 (373-419)||(1024479-1024525)
chr8 (373-425)||(6020644-6020696)
[»] chr7 (2 HSPs)
chr7 (368-449)||(27414206-27414288)
chr7 (373-425)||(35831101-35831153)
[»] chr4 (4 HSPs)
chr4 (394-444)||(19413261-19413311)
chr4 (373-450)||(11271725-11271801)
chr4 (373-450)||(41696735-41696812)
chr4 (363-446)||(13722743-13722827)
[»] chr6 (1 HSPs)
chr6 (373-432)||(6045399-6045458)
[»] chr5 (2 HSPs)
chr5 (383-450)||(18898590-18898657)
chr5 (381-450)||(10478316-10478385)
[»] chr1 (2 HSPs)
chr1 (388-450)||(5798342-5798404)
chr1 (373-444)||(41515503-41515576)


Alignment Details
Target: chr3 (Bit Score: 546; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 4 - 606
Target Start/End: Original strand, 39279353 - 39279954
Alignment:
Q  4 agaggaaaatttgtttcatattgtctgaatgcaatgatgaattgaatgaggaattaaagttcttgaggattggattcaaaaatatggaggaatccttggt 103  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39279353 agaggaaaatt-gtatcatattgtctgaatgcaatgatgaattgaatgaggaattaaagttcttgaggattggattcaaaaatatggaggaatccttggt 39279451  T
Q  104 ccgagagaaggaagaaaaaatgacgactgcaaaggacataggaatgcgggcaaaactttttaaagagttagtaaaacaactggttattgagagagagcgt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39279452 ccgagagaaggaagaaaaaatgacgactgcaaaggacataggaatgcgggcaaaactttttaaagagttagtaaaacaactggttattgagagagagcgt 39279551  T
Q  204 cttaaagatcaggtatgtgccacgatagagaatacatttcatgttaactatataatattacaaatatttcatggtctctcttagccaatacctgcttata 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||    
T  39279552 cttaaagatcaggtatgtgccacgatagagaatacatttcatgttaactatataatattacaaatatttcatggtctgtcttagccaatgccttcttata 39279651  T
Q  304 aacttctaggagcannnnnnnattagcttcatgttcttcggaatcccagtctgccattatgattttggcaaaactacactttagaacttcaacaaaatca 403  Q
    ||||||||||||||       |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39279652 aacttctaggagcatttttttattagcttcatgtttttcggaatcccagtctgccattatgattttggcaaaactacactttagaacttcaacaaaatca 39279751  T
Q  404 ccgtgtcaccgtgatttcgtcaaaatcaccgtgattccaaatatgcagtaggactatataaattcattctcacccctccttatattttactgccatttga 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39279752 ccgtgtcaccgtgatttcgtcaaaatcaccgtgattccaaatatgcactaggactatataaattcattctcacccctccttatattttactgccatttga 39279851  T
Q  504 tcttcacatgtggatctattttgctcctttttatttcatagaatttcatctgcatctcacttaaataagcaagttgatgccataagtatgtgatgggata 603  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39279852 tcttcacatgtggatctattttgctcccttttatttcatagaatttcatctgcatctcacttaaataagcaagttgatgccataagtatgtgatgggata 39279951  T
Q  604 gct 606  Q
    |||    
T  39279952 gct 39279954  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 444
Target Start/End: Complemental strand, 8091340 - 8091254
Alignment:
Q  359 attatgattttggcaaaact-acactttagaacttcaacaaaatcaccgtgtcaccgtgatttcgtcaaaatcaccgtgattccaaa 444  Q
    ||||| |||||||||||| | ||||  | |||||||||||||||||| |||||||||||||||| ||||| |||  |||||| ||||    
T  8091340 attattattttggcaaaagttacaccgttgaacttcaacaaaatcacagtgtcaccgtgatttcttcaaattcaatgtgatttcaaa 8091254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 387 - 427
Target Start/End: Complemental strand, 8091180 - 8091140
Alignment:
Q  387 gaacttcaacaaaatcaccgtgtcaccgtgatttcgtcaaa 427  Q
    |||||||||||||||||| |||||||||||||||| |||||    
T  8091180 gaacttcaacaaaatcacagtgtcaccgtgatttcttcaaa 8091140  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 390 - 444
Target Start/End: Original strand, 22345797 - 22345851
Alignment:
Q  390 cttcaacaaaatcaccgtgtcaccgtgatttcgtcaaaatcaccgtgattccaaa 444  Q
    ||||||||||||||| ||||||| ||||||| |||||| |||| |||| ||||||    
T  22345797 cttcaacaaaatcacggtgtcacagtgatttagtcaaactcacggtgaatccaaa 22345851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 373 - 427
Target Start/End: Original strand, 38692796 - 38692850
Alignment:
Q  373 aaaactacactttagaacttcaacaaaatcaccgtgtcaccgtgatttcgtcaaa 427  Q
    ||||||||||||| || ||||||||||||||| ||| ||||||| ||| ||||||    
T  38692796 aaaactacactttggagcttcaacaaaatcacagtgccaccgtggttttgtcaaa 38692850  T

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Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 192 - 475
Target Start/End: Complemental strand, 31464992 - 31464721
Alignment:
Q  192 gagagagagcgtcttaaagatcaggtatgtgccacgatagagaatacatttcatgttaactatataatattacaaatatttcatggtctctcttagccaa 291  Q
    |||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| ||||     |||||||||||||  |||| | |||||| |    
T  31464992 gagagagagcatcttaaagatcaggaatgtgccaagatagagaatacatttcatgttaaccatat-----tacaaatatttcactgtctgttttagccga 31464898  T
Q  292 tacctgcttataaacttctaggagcannnnnnnattagcttcatgttcttcggaatcccagtctgccattatgattttggcaaaactacactttagaact 391  Q
    | | || ||||| | | |||||||||       ||||||||  | |||||| ||||| || | | |||     ||||  ||||| |||||||||||||||    
T  31464897 tgcatgtttatagaatcctaggagcatgtttggattagctttgtcttcttcagaatcacaatgttcca-----attt--gcaaacctacactttagaact 31464805  T
Q  392 tcaacaaaatcaccgtgtcaccgtgatttcgtcaaaatcaccgtgattccaaatatgcagtaggactatataaattcattctca 475  Q
    |||||||||||||||||||||||||||||| ||||| |||  ||||||  |||| ||||   |||||||||||| |||||||||    
T  31464804 tcaacaaaatcaccgtgtcaccgtgatttcatcaaactcatagtgattttaaatctgcatctggactatataaactcattctca 31464721  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 31465102 - 31464995
Alignment:
Q  44 attgaatgaggaattaaagttcttgaggattggattcaaaaatatggaggaatccttggtccgagagaaggaagaaaaaatgacgactgcaaaggacata 143  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||  | ||||||| |||| |||||  |  ||| |||| || |||    
T  31465102 attgaatcaggaattaaagttcttgaggattggattaaaaaatatggaggaatccttgcgcggagagaatgaagcaaaaacaagaactacaaaagatata 31465003  T
Q  144 ggaatgcg 151  Q
    ||||||||    
T  31465002 ggaatgcg 31464995  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 427
Target Start/End: Complemental strand, 14570564 - 14570514
Alignment:
Q  377 ctacactttagaacttcaacaaaatcaccgtgtcaccgtgatttcgtcaaa 427  Q
    ||||| |||||||||| |||||||||| ||||||||||||||||| |||||    
T  14570564 ctacaatttagaactttaacaaaatcaacgtgtcaccgtgatttcatcaaa 14570514  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 377 - 421
Target Start/End: Complemental strand, 44120398 - 44120354
Alignment:
Q  377 ctacactttagaacttcaacaaaatcaccgtgtcaccgtgatttc 421  Q
    |||||||||  ||||||||||||||||| |||||| |||||||||    
T  44120398 ctacactttgaaacttcaacaaaatcacggtgtcaacgtgatttc 44120354  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 373 - 432
Target Start/End: Original strand, 9050043 - 9050102
Alignment:
Q  373 aaaactacactttagaacttcaacaaaatcaccgtgtcaccgtgatttcgtcaaaatcac 432  Q
    ||||||||||||| ||  ||||||||||| |||||||||| |||||||||||||| ||||    
T  9050043 aaaactacactttggagtttcaacaaaatgaccgtgtcactgtgatttcgtcaaactcac 9050102  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 367 - 448
Target Start/End: Complemental strand, 40354545 - 40354465
Alignment:
Q  367 tttggcaaaa-ctacactttagaacttcaacaaaatcaccgtgtcaccgtgatttcgtcaaaatcaccgtgattccaaatatg 448  Q
    |||||||||| ||||| ||||||| ||||| |||||||  |||||||||||||||||||||| ||||| | |||| |||||||    
T  40354545 tttggcaaaatctacattttagaatttcaataaaatca--gtgtcaccgtgatttcgtcaaactcaccataattctaaatatg 40354465  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 373 - 450
Target Start/End: Complemental strand, 6019626 - 6019549
Alignment:
Q  373 aaaactacactttagaacttcaacaaaatcaccgtgtcaccgtgatttcgtcaaaatcaccgtgattccaaatatgca 450  Q
    |||||||||||||| |||||||||||||||||  |||||||  ||||||||| || ||||| | | |||||| |||||    
T  6019626 aaaactacactttataacttcaacaaaatcacgttgtcaccacgatttcgtccaactcaccatcaatccaaacatgca 6019549  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 373 - 419
Target Start/End: Complemental strand, 1024525 - 1024479
Alignment:
Q  373 aaaactacactttagaacttcaacaaaatcaccgtgtcaccgtgatt 419  Q
    ||||||| |||||||| ||| ||||||||||| ||||||||||||||    
T  1024525 aaaactatactttagagctttaacaaaatcacagtgtcaccgtgatt 1024479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 373 - 425
Target Start/End: Complemental strand, 6020696 - 6020644
Alignment:
Q  373 aaaactacactttagaacttcaacaaaatcaccgtgtcaccgtgatttcgtca 425  Q
    |||||||||||||||| ||||||||||||||  ||| |||||| |||| ||||    
T  6020696 aaaactacactttagagcttcaacaaaatcatggtggcaccgtaattttgtca 6020644  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 449
Target Start/End: Original strand, 27414206 - 27414288
Alignment:
Q  368 ttggcaaaa-ctacactttagaacttcaacaaaatcaccgtgtcaccgtgatttcgtcaaaatcaccgtgattccaaatatgc 449  Q
    ||||||||| ||| ||||| |||||||||||||| ||  ||| |||||||| ||||||||| ||||| |||||||||| ||||    
T  27414206 ttggcaaaagctatactttggaacttcaacaaaaacatggtggcaccgtgaattcgtcaaactcaccatgattccaaacatgc 27414288  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 373 - 425
Target Start/End: Complemental strand, 35831153 - 35831101
Alignment:
Q  373 aaaactacactttagaacttcaacaaaatcaccgtgtcaccgtgatttcgtca 425  Q
    |||| ||||||||||| |||| |||||||||| |||||||||| |||||||||    
T  35831153 aaaaatacactttagagcttctacaaaatcacagtgtcaccgtaatttcgtca 35831101  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 444
Target Start/End: Complemental strand, 19413311 - 19413261
Alignment:
Q  394 aacaaaatcaccgtgtcaccgtgatttcgtcaaaatcaccgtgattccaaa 444  Q
    ||||||||||| |||||||||||||||||||| | ||||| ||||||||||    
T  19413311 aacaaaatcacagtgtcaccgtgatttcgtcacactcaccatgattccaaa 19413261  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 450
Target Start/End: Complemental strand, 11271801 - 11271725
Alignment:
Q  373 aaaactacactttagaacttcaacaaaatcaccgtgtcaccgtgatttcgtcaaaatcaccgtgattccaaatatgca 450  Q
    ||||||||||||| || ||| | ||||||||| ||| |||| |||||| |||||| ||||||| |||||||| |||||    
T  11271801 aaaactacactttggagctttatcaaaatcactgtgacaccatgattttgtcaaactcaccgt-attccaaacatgca 11271725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 450
Target Start/End: Original strand, 41696735 - 41696812
Alignment:
Q  373 aaaactacactttagaacttcaacaaaatcaccgtgtcaccgtgatttcgtcaaaatcaccgtgattccaaatatgca 450  Q
    |||||||||||||  | | |||||||||||||  ||||| ||||||||||| ||| |||| || |||||||| |||||    
T  41696735 aaaactacactttgaagcatcaacaaaatcacattgtcatcgtgatttcgttaaactcactgtcattccaaacatgca 41696812  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 363 - 446
Target Start/End: Complemental strand, 13722827 - 13722743
Alignment:
Q  363 tgattttggcaaaa-ctacactttagaacttcaacaaaatcaccgtgtcaccgtgatttcgtcaaaatcaccgtgattccaaata 446  Q
    |||||||||||||| | |||||||  | ||||||||||||||   |||  |||||||||||| ||| |||| |||||||||||||    
T  13722827 tgattttggcaaaaaccacactttgtagcttcaacaaaatcataatgttgccgtgatttcgtgaaactcacggtgattccaaata 13722743  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 432
Target Start/End: Original strand, 6045399 - 6045458
Alignment:
Q  373 aaaactacactttagaacttcaacaaaatcaccgtgtcaccgtgatttcgtcaaaatcac 432  Q
    |||| |||||||||||||||| ||||||| |   ||||||||||||||||||||| ||||    
T  6045399 aaaattacactttagaacttctacaaaattataatgtcaccgtgatttcgtcaaattcac 6045458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 450
Target Start/End: Complemental strand, 18898657 - 18898590
Alignment:
Q  383 tttagaacttcaacaaaatcaccgtgtcaccgtgatttcgtcaaaatcaccgtgattccaaatatgca 450  Q
    |||||| ||||||||||||||  |||||||||||||||| ||||  ||||||| | |||||| |||||    
T  18898657 tttagagcttcaacaaaatcaaggtgtcaccgtgatttcatcaagctcaccgtcaatccaaacatgca 18898590  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 450
Target Start/End: Original strand, 10478316 - 10478385
Alignment:
Q  381 actttagaacttcaacaaaatcaccgtgtcaccgtgatttcgtcaaaatcaccgtgattccaaatatgca 450  Q
    ||||| |||||||||||||||||| ||| |||||||||||  ||||| ||| | |||||| ||| |||||    
T  10478316 actttggaacttcaacaaaatcacggtggcaccgtgattttatcaaactcatcctgattctaaacatgca 10478385  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 388 - 450
Target Start/End: Complemental strand, 5798404 - 5798342
Alignment:
Q  388 aacttcaacaaaatcaccgtgtcaccgtgatttcgtcaaaatcaccgtgattccaaatatgca 450  Q
    ||||||||||||||||   ||||| |||||||||||| || |||| ||||||||||| |||||    
T  5798404 aacttcaacaaaatcatgatgtcatcgtgatttcgtctaattcacagtgattccaaacatgca 5798342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 373 - 444
Target Start/End: Original strand, 41515503 - 41515576
Alignment:
Q  373 aaaactacactttagaacttcaacaaaatcaccgt--gtcaccgtgatttcgtcaaaatcaccgtgattccaaa 444  Q
    |||| |||||||| ||||||||| |||||||| ||  ||||| |||||||||||||| |||  |||||||||||    
T  41515503 aaaattacacttttgaacttcaataaaatcacagtatgtcacggtgatttcgtcaaattcattgtgattccaaa 41515576  T

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