View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1929_high_30 (Length: 217)

Name: NF1929_high_30
Description: NF1929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1929_high_30
NF1929_high_30
[»] chr7 (10 HSPs)
chr7 (12-217)||(46280961-46281166)
chr7 (112-161)||(29363610-29363659)
chr7 (112-192)||(23214924-23215006)
chr7 (107-153)||(25833419-25833465)
chr7 (169-217)||(39539759-39539807)
chr7 (108-150)||(11619073-11619115)
chr7 (112-150)||(43854960-43854998)
chr7 (111-212)||(22387814-22387917)
chr7 (162-214)||(28076601-28076653)
chr7 (106-150)||(28691749-28691793)
[»] chr6 (7 HSPs)
chr6 (112-217)||(7785663-7785770)
chr6 (112-156)||(33068521-33068565)
chr6 (162-217)||(9027622-9027677)
chr6 (170-217)||(34939788-34939835)
chr6 (114-156)||(24973948-24973990)
chr6 (112-214)||(2460070-2460174)
chr6 (111-156)||(13908347-13908392)
[»] chr1 (11 HSPs)
chr1 (104-161)||(6292594-6292651)
chr1 (114-216)||(15581299-15581403)
chr1 (112-161)||(33723301-33723350)
chr1 (102-161)||(601142-601201)
chr1 (111-214)||(4868447-4868551)
chr1 (179-217)||(45327624-45327662)
chr1 (164-217)||(24502801-24502854)
chr1 (164-217)||(27140522-27140575)
chr1 (114-214)||(4549462-4549565)
chr1 (162-214)||(30259457-30259509)
chr1 (108-144)||(43941929-43941965)
[»] chr5 (14 HSPs)
chr5 (112-156)||(8089368-8089412)
chr5 (114-156)||(11615575-11615617)
chr5 (113-150)||(10502393-10502430)
chr5 (168-217)||(18700428-18700477)
chr5 (119-157)||(30082200-30082238)
chr5 (113-154)||(5563810-5563851)
chr5 (112-214)||(10391389-10391493)
chr5 (111-156)||(19627552-19627597)
chr5 (113-170)||(20982132-20982189)
chr5 (112-140)||(8177451-8177479)
chr5 (112-156)||(11153365-11153409)
chr5 (112-148)||(14257563-14257599)
chr5 (112-156)||(17369310-17369354)
chr5 (112-152)||(27105870-27105910)
[»] chr3 (11 HSPs)
chr3 (162-217)||(43115100-43115155)
chr3 (116-217)||(24624254-24624357)
chr3 (118-185)||(22667479-22667548)
chr3 (118-185)||(22724118-22724187)
chr3 (112-161)||(37138384-37138433)
chr3 (120-214)||(37273181-37273277)
chr3 (112-161)||(44014717-44014766)
chr3 (112-156)||(11041378-11041422)
chr3 (162-214)||(26542584-26542636)
chr3 (112-140)||(27896097-27896125)
chr3 (112-201)||(49605770-49605861)
[»] chr2 (14 HSPs)
chr2 (113-217)||(43456627-43456733)
chr2 (112-198)||(15120246-15120334)
chr2 (112-161)||(41170712-41170761)
chr2 (111-156)||(43259942-43259987)
chr2 (162-217)||(14299602-14299657)
chr2 (112-155)||(30990358-30990401)
chr2 (111-154)||(40837355-40837398)
chr2 (112-150)||(2790646-2790684)
chr2 (108-161)||(42852617-42852670)
chr2 (112-140)||(2790361-2790389)
chr2 (108-156)||(4350797-4350845)
chr2 (119-155)||(33192309-33192345)
chr2 (181-217)||(43065440-43065476)
chr2 (181-217)||(44269010-44269046)
[»] chr8 (8 HSPs)
chr8 (108-154)||(10488572-10488618)
chr8 (113-150)||(40859703-40859740)
chr8 (112-156)||(10062060-10062104)
chr8 (111-166)||(18331811-18331866)
chr8 (112-150)||(10758176-10758214)
chr8 (112-161)||(16162862-16162911)
chr8 (112-217)||(11569376-11569483)
chr8 (108-140)||(45071497-45071529)
[»] scaffold0020 (1 HSPs)
scaffold0020 (112-156)||(159892-159936)
[»] chr4 (3 HSPs)
chr4 (118-204)||(2996630-2996718)
chr4 (112-214)||(27123271-27123375)
chr4 (181-217)||(53155304-53155340)
[»] scaffold0110 (1 HSPs)
scaffold0110 (123-212)||(4153-4244)


Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 46280961 - 46281166
Alignment:
Q  12 tcatcacataaagattttaataaacaatttccttcacaaataaatgtatggtaattgtccatactccatagtttcaacaatctgccagtcaattatggtt 111  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46280961 tcatctcataaagattttaataaacaatttccttcacaaataaatgtatggtaattgtccatactccatagtttcaacaatctgccagtcaattatggtt 46281060  T
Q  112 tgtttggattggcttatttgaacttatctgctaacataaacacttttgagtgtttgaaagagtttacggaaacaacttatgccatgtctataaattgttt 211  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46281061 tgtttggattggcttatttgaacttatctactaacataaacacttttgagtgtttgaaagagtttacggaaacaacttatgccatgtctataaattgttt 46281160  T
Q  212 tcagct 217  Q
    ||||||    
T  46281161 tcagct 46281166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 29363659 - 29363610
Alignment:
Q  112 tgtttggattggcttatttgaacttatctgctaacataaacacttttgag 161  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||| ||||    
T  29363659 tgtttggattggcttatttgaacttatctactaacataagcacttgtgag 29363610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 192
Target Start/End: Complemental strand, 23215006 - 23214924
Alignment:
Q  112 tgtttggattggcttatttgaacttatctgctaacataaacacttttgag--tgtttgaaagagtttacggaaacaacttatg 192  Q
    ||||||||||| ||||||||| ||||||| ||| ||||||||||| ||||  ||||||| ||| |||| | ||||||||||||    
T  23215006 tgtttggattgacttatttgaccttatctactagcataaacacttatgagactgtttgagagaatttatgaaaacaacttatg 23214924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 25833465 - 25833419
Alignment:
Q  107 tggtttgtttggattggcttatttgaacttatctgctaacataaaca 153  Q
    |||||||||| ||||| ||||||||||||||||| ||||||||||||    
T  25833465 tggtttgtttagattgacttatttgaacttatctactaacataaaca 25833419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 39539759 - 39539807
Alignment:
Q  169 aagagtttacggaaacaacttatgccatgtctataaattgttttcagct 217  Q
    |||||||||||||||||||||||| |||||| ||||  |||||||||||    
T  39539759 aagagtttacggaaacaacttatgacatgtccataagctgttttcagct 39539807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 11619073 - 11619115
Alignment:
Q  108 ggtttgtttggattggcttatttgaacttatctgctaacataa 150  Q
    ||||||||||||||||||||||||| ||||||| || ||||||    
T  11619073 ggtttgtttggattggcttatttgagcttatctactgacataa 11619115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 43854960 - 43854998
Alignment:
Q  112 tgtttggattggcttatttgaacttatctgctaacataa 150  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  43854960 tgtttgaattggcttatttgaacttatctactaacataa 43854998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 22387814 - 22387917
Alignment:
Q  111 ttgtttggattggcttatttgaacttatctgctaacataaacacttttgag--tgtttgaaagagtttacggaaacaacttatgccatgtctataaattg 208  Q
    |||||||||||| |||| | |||||||| | || |||||||||| | ||||  ||||||  |||| ||| | |||||||||||| ||||| |||||| ||    
T  22387814 ttgtttggattgacttactagaacttatttactgacataaacacgtgtgagactgtttgggagagcttatgaaaacaacttatggcatgtttataaactg 22387913  T
Q  209 tttt 212  Q
    ||||    
T  22387914 tttt 22387917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 28076653 - 28076601
Alignment:
Q  162 tgtttgaaagagtttacggaaacaacttatgccatgtctataaattgttttca 214  Q
    ||||||| ||| ||||||||||||||| ||| |||||| |||| |||||||||    
T  28076653 tgtttgagagaatttacggaaacaactaatgacatgtccataagttgttttca 28076601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 28691749 - 28691793
Alignment:
Q  106 atggtttgtttggattggcttatttgaacttatctgctaacataa 150  Q
    ||||| ||||||||||| |||||||||  ||||||||||||||||    
T  28691749 atggtctgtttggattgacttatttgagtttatctgctaacataa 28691793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 112 - 217
Target Start/End: Original strand, 7785663 - 7785770
Alignment:
Q  112 tgtttggattggcttatttgaacttatctgctaacataaacacttttgag--tgtttgaaagagtttacggaaacaacttatgccatgtctataaattgt 209  Q
    ||||||||||| |||||||||| |||||| || |||||| |||||||| |  || ||||| |||||||| |||||| |||||| ||||||||||| ||||    
T  7785663 tgtttggattgtcttatttgaatttatctactgacataagcacttttgggactgattgaaggagtttacagaaacagcttatgacatgtctataagttgt 7785762  T
Q  210 tttcagct 217  Q
    ||||||||    
T  7785763 tttcagct 7785770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 33068521 - 33068565
Alignment:
Q  112 tgtttggattggcttatttgaacttatctgctaacataaacactt 156  Q
    ||||||||||||||||||||||||||||| || |||||| |||||    
T  33068521 tgtttggattggcttatttgaacttatctactgacataagcactt 33068565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 9027677 - 9027622
Alignment:
Q  162 tgtttgaaagagtttacggaaacaacttatgccatgtctataaattgttttcagct 217  Q
    |||||||||||| ||| ||||| |||||||| |||||| |||| ||||||||||||    
T  9027677 tgtttgaaagagcttatggaaataacttatgacatgtccataagttgttttcagct 9027622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 34939835 - 34939788
Alignment:
Q  170 agagtttacggaaacaacttatgccatgtctataaattgttttcagct 217  Q
    |||| ||||||||||| |||||| |||||| |||||||||||||||||    
T  34939835 agagcttacggaaacagcttatgacatgtccataaattgttttcagct 34939788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 24973948 - 24973990
Alignment:
Q  114 tttggattggcttatttgaacttatctgctaacataaacactt 156  Q
    |||||||| ||||||||||||||||||||| |||||| |||||    
T  24973948 tttggattagcttatttgaacttatctgctgacataagcactt 24973990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 214
Target Start/End: Original strand, 2460070 - 2460174
Alignment:
Q  112 tgtttggattggcttatttgaacttatctgctaacataaacacttttgag--tgtttgaaagagtttacggaaacaacttatgccatgtctataaattgt 209  Q
    ||||||||||  ||||||||| |||||   ||| |||||  |||| ||||  ||||||| |||| ||| |||||||||||||| ||||||| ||| ||||    
T  2460070 tgtttggattaacttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgt 2460169  T
Q  210 tttca 214  Q
    |||||    
T  2460170 tttca 2460174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 13908392 - 13908347
Alignment:
Q  111 ttgtttggattggcttatttgaacttatctgctaacataaacactt 156  Q
    ||||||| |||| ||||||||||||||||| || ||||||||||||    
T  13908392 ttgtttgaattgacttatttgaacttatctactgacataaacactt 13908347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 6292651 - 6292594
Alignment:
Q  104 ttatggtttgtttggattggcttatttgaacttatctgctaacataaacacttttgag 161  Q
    ||||||||||||||||||| ||||||||| ||||||| || |||||| ||||||||||    
T  6292651 ttatggtttgtttggattgacttatttgagcttatctactgacataagcacttttgag 6292594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 216
Target Start/End: Complemental strand, 15581403 - 15581299
Alignment:
Q  114 tttggattggcttatttgaacttatctgctaacataaacacttttgag--tgtttgaaagagtttacggaaacaacttatgccatgtctataaattgttt 211  Q
    |||||| | |||||||| | ||||||| || |||||| ||||| ||||  |||||| ||||| | | |||||||||||||| |||||||||||  |||||    
T  15581403 tttggaatagcttattttagcttatctactgacataagcacttgtgagattgtttggaagagctaatggaaacaacttatgacatgtctataagctgttt 15581304  T
Q  212 tcagc 216  Q
    |||||    
T  15581303 tcagc 15581299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 33723301 - 33723350
Alignment:
Q  112 tgtttggattggcttatttgaacttatctgctaacataaacacttttgag 161  Q
    ||||||||||| ||||||||||||||||| ||| ||||||||||| ||||    
T  33723301 tgtttggattgacttatttgaacttatctactaccataaacacttgtgag 33723350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 601201 - 601142
Alignment:
Q  102 aattatggtttgtttggattggcttatttgaacttatctgctaacataaacacttttgag 161  Q
    ||||| ||| ||||||||||| |||| |||| |||||||| |||||||| ||||||||||    
T  601201 aattaaggtatgtttggattgacttacttgagcttatctgataacataagcacttttgag 601142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 214
Target Start/End: Complemental strand, 4868551 - 4868447
Alignment:
Q  111 ttgtttggattggcttatttgaacttatctgctaacataaacacttttgag--tgtttgaaagagtttacggaaacaacttatgccatgtctataaattg 208  Q
    ||||||||||||  ||||||||| ||||||  | |||||  ||||| ||||  ||||||| |||||||| | |||||||||||| |||||| |||| |||    
T  4868551 ttgtttggattgatttatttgaatttatctattgacataggcacttgtgagactgtttgagagagtttatg-aaacaacttatgacatgtcaataagttg 4868453  T
Q  209 ttttca 214  Q
    ||||||    
T  4868452 ttttca 4868447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 45327662 - 45327624
Alignment:
Q  179 ggaaacaacttatgccatgtctataaattgttttcagct 217  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  45327662 ggaaacaacttatgacatgtccataaattgttttcagct 45327624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 24502801 - 24502854
Alignment:
Q  164 tttgaaagagtttacggaaacaacttatgccatgtctataaattgttttcagct 217  Q
    ||||| |||| |||| ||||||||||||| |||||| |||| ||||||||||||    
T  24502801 tttgagagagcttacagaaacaacttatgacatgtcaataatttgttttcagct 24502854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 27140575 - 27140522
Alignment:
Q  164 tttgaaagagtttacggaaacaacttatgccatgtctataaattgttttcagct 217  Q
    ||||| |||||||| ||||||| |||||| |||||| |||| ||||||||||||    
T  27140575 tttgagagagtttaaggaaacagcttatgacatgtccataagttgttttcagct 27140522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 214
Target Start/End: Original strand, 4549462 - 4549565
Alignment:
Q  114 tttggattggcttatttgaacttatctgctaacataaacacttttgag--tgtttgaaagagtttacggaaacaacttatgccatgtctataaa-ttgtt 210  Q
    |||||||||||||||||||  |||||| ||  ||||| || || ||||  ||||||  |||| |||  ||||||||||||| |||||||||||| |||||    
T  4549462 tttggattggcttatttgagattatctactggcataagcatttctgagactgtttgggagagcttatagaaacaacttatgacatgtctataaagttgtt 4549561  T
Q  211 ttca 214  Q
    ||||    
T  4549562 ttca 4549565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 30259457 - 30259509
Alignment:
Q  162 tgtttgaaagagtttacggaaacaacttatgccatgtctataaattgttttca 214  Q
    |||||||||||| |||  ||||||||||| | |||||| ||||||||||||||    
T  30259457 tgtttgaaagagcttatagaaacaacttacgacatgtcaataaattgttttca 30259509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 43941929 - 43941965
Alignment:
Q  108 ggtttgtttggattggcttatttgaacttatctgcta 144  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  43941929 ggtttgtttggattggcttatttgaacatatccgcta 43941965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 8089412 - 8089368
Alignment:
Q  112 tgtttggattggcttatttgaacttatctgctaacataaacactt 156  Q
    ||||||||||||||||||||||||||||| || ||||||||||||    
T  8089412 tgtttggattggcttatttgaacttatctcctgacataaacactt 8089368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 11615575 - 11615617
Alignment:
Q  114 tttggattggcttatttgaacttatctgctaacataaacactt 156  Q
    ||||||||||||||||||| ||||||| |||||||||||||||    
T  11615575 tttggattggcttatttgagcttatctactaacataaacactt 11615617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 10502393 - 10502430
Alignment:
Q  113 gtttggattggcttatttgaacttatctgctaacataa 150  Q
    |||||||||||||||||||| |||||||||||||||||    
T  10502393 gtttggattggcttatttgaccttatctgctaacataa 10502430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 18700477 - 18700428
Alignment:
Q  168 aaagagtttacggaaacaacttatgccatgtctataaattgttttcagct 217  Q
    |||||| ||| |||||||||||||| ||||||||||| ||||||||||||    
T  18700477 aaagagcttatggaaacaacttatgacatgtctataagttgttttcagct 18700428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Complemental strand, 30082238 - 30082200
Alignment:
Q  119 attggcttatttgaacttatctgctaacataaacacttt 157  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  30082238 attggcttatttgaacttatctgctaacatgaactcttt 30082200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 5563851 - 5563810
Alignment:
Q  113 gtttggattggcttatttgaacttatctgctaacataaacac 154  Q
    ||||| |||||||||||||||||||||| | |||||||||||    
T  5563851 gtttgaattggcttatttgaacttatctacaaacataaacac 5563810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 214
Target Start/End: Complemental strand, 10391493 - 10391389
Alignment:
Q  112 tgtttggattggcttatttgaacttatctgctaacataaacacttttgag--tgtttgaaagagtttacggaaacaacttatgccatgtctataaattgt 209  Q
    ||||| ||||||||||||| | ||||||||||  ||||| ||||| ||||  |||||| |||||||||   |||||  ||||| ||||||||| | ||||    
T  10391493 tgtttcgattggcttatttaagcttatctgctggcataatcacttgtgagattgtttggaagagtttataaaaacactttatgacatgtctattagttgt 10391394  T
Q  210 tttca 214  Q
    |||||    
T  10391393 tttca 10391389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 19627552 - 19627597
Alignment:
Q  111 ttgtttggattggcttatttgaacttatctgctaacataaacactt 156  Q
    ||||||||||||||| |||||||| ||||| |||| ||||||||||    
T  19627552 ttgtttggattggctaatttgaacctatctactaatataaacactt 19627597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 20982132 - 20982189
Alignment:
Q  113 gtttggattggcttatttgaacttatctgctaacataaacacttttgagtgtttgaaa 170  Q
    |||||||||||||||||||| ||||||| ||  | ||||||||| ||| |||||||||    
T  20982132 gtttggattggcttatttgagcttatctactgtcgtaaacacttgtgactgtttgaaa 20982189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 140
Target Start/End: Original strand, 8177451 - 8177479
Alignment:
Q  112 tgtttggattggcttatttgaacttatct 140  Q
    |||||||||||||||||||||||||||||    
T  8177451 tgtttggattggcttatttgaacttatct 8177479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 11153365 - 11153409
Alignment:
Q  112 tgtttggattggcttatttgaacttatctgctaacataaacactt 156  Q
    ||||||||||||||| ||||| ||||||| ||| |||||||||||    
T  11153365 tgtttggattggcttgtttgagcttatctactagcataaacactt 11153409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 14257599 - 14257563
Alignment:
Q  112 tgtttggattggcttatttgaacttatctgctaacat 148  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  14257599 tgtttggattgacttatttgaacttatctactaacat 14257563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 17369354 - 17369310
Alignment:
Q  112 tgtttggattggcttatttgaacttatctgctaacataaacactt 156  Q
    ||||||||||| ||||||||||||||||| || |||||| |||||    
T  17369354 tgtttggattgacttatttgaacttatctactgacataatcactt 17369310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 27105870 - 27105910
Alignment:
Q  112 tgtttggattggcttatttgaacttatctgctaacataaac 152  Q
    |||| ||||||||||||||||||||||||  ||||||||||    
T  27105870 tgttcggattggcttatttgaacttatctattaacataaac 27105910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 43115155 - 43115100
Alignment:
Q  162 tgtttgaaagagtttacggaaacaacttatgccatgtctataaattgttttcagct 217  Q
    |||||| ||||||||| |||||||||||||| |||||| |||| ||||||||||||    
T  43115155 tgtttggaagagtttatggaaacaacttatgacatgtccataacttgttttcagct 43115100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 217
Target Start/End: Complemental strand, 24624357 - 24624254
Alignment:
Q  116 tggattggcttatttgaacttatctgctaacataaacacttttgag--tgtttgaaagagtttacggaaacaacttatgccatgtctataaattgttttc 213  Q
    |||||||||||| |||||||||||| || |||| | ||||| | ||  |||||| ||||| ||| | ||||| |||||| |||||| ||||| |||||||    
T  24624357 tggattggcttagttgaacttatctactcacattagcacttgtaagactgtttggaagagcttatgaaaacagcttatgacatgtccataaactgttttc 24624258  T
Q  214 agct 217  Q
    ||||    
T  24624257 agct 24624254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 185
Target Start/End: Complemental strand, 22667548 - 22667479
Alignment:
Q  118 gattggcttatttgaacttatctgctaacataaacacttttgag--tgtttgaaagagtttacggaaaca 185  Q
    ||||||||||||||| ||||||| || |||||| ||||| ||||  ||||||| |||||||| |||||||    
T  22667548 gattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatggaaaca 22667479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 185
Target Start/End: Complemental strand, 22724187 - 22724118
Alignment:
Q  118 gattggcttatttgaacttatctgctaacataaacacttttgag--tgtttgaaagagtttacggaaaca 185  Q
    ||||||||||||||| ||||||| || |||||| ||||| ||||  ||||||| |||||||| |||||||    
T  22724187 gattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatggaaaca 22724118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 37138433 - 37138384
Alignment:
Q  112 tgtttggattggcttatttgaacttatctgctaacataaacacttttgag 161  Q
    |||||||||||||||||| ||| |||||| || |||||||||||| ||||    
T  37138433 tgtttggattggcttattagaatttatctactgacataaacacttgtgag 37138384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 214
Target Start/End: Complemental strand, 37273277 - 37273181
Alignment:
Q  120 ttggcttatttgaacttatctgctaacataaacacttttgag--tgtttgaaagagtttacggaaacaacttatgccatgtctataaattgttttca 214  Q
    ||||||||||||||||||| |  || ||||| ||||  ||||  ||||||  |||| ||| |||||||||||||| |||||| |||| |||||||||    
T  37273277 ttggcttatttgaacttatttattagcataagcactggtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttca 37273181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 44014717 - 44014766
Alignment:
Q  112 tgtttggattggcttatttgaacttatctgctaacataaacacttttgag 161  Q
    |||||||||||||||||||||  |||||| ||| ||||||||||| ||||    
T  44014717 tgtttggattggcttatttgagtttatctactagcataaacacttgtgag 44014766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 11041378 - 11041422
Alignment:
Q  112 tgtttggattggcttatttgaacttatctgctaacataaacactt 156  Q
    ||||||||||| |||| |||| ||||||||||| |||||||||||    
T  11041378 tgtttggattgacttaattgagcttatctgctagcataaacactt 11041422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 26542636 - 26542584
Alignment:
Q  162 tgtttgaaagagtttacggaaacaacttatgccatgtctataaattgttttca 214  Q
    |||||| ||||| |||| |||||||||||||  |||||||||| |||||||||    
T  26542636 tgtttggaagagcttactgaaacaacttatgatatgtctataacttgttttca 26542584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 140
Target Start/End: Original strand, 27896097 - 27896125
Alignment:
Q  112 tgtttggattggcttatttgaacttatct 140  Q
    |||||||||||||||||||||||||||||    
T  27896097 tgtttggattggcttatttgaacttatct 27896125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 49605770 - 49605861
Alignment:
Q  112 tgtttggattggcttatttgaacttatctgctaacataaacacttttgag--tgtttgaaagagtttacggaaacaacttatgccatgtcta 201  Q
    |||||||||| | ||||||||  |||||| ||| |||||  |||| ||||  ||||||| |||||| | |||||||||||||| ||||||||    
T  49605770 tgtttggattagtttatttgagtttatcttctagcataagtacttgtgagagtgtttgagagagttcatggaaacaacttatgacatgtcta 49605861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 217
Target Start/End: Original strand, 43456627 - 43456733
Alignment:
Q  113 gtttggattggcttatttgaacttatctgctaacataaacactttt--gagtgtttgaaagagtttacggaaacaacttatgccatgtctataaattgtt 210  Q
    |||||||||  ||||||||||||||| | || |||||||||||| |  || |||||||||||| ||  | |||||||| ||| |||||| ||||| ||||    
T  43456627 gtttggatttacttatttgaacttatttactcacataaacacttgtaagactgtttgaaagagcttgtgaaaacaactcatgacatgtccataaactgtt 43456726  T
Q  211 ttcagct 217  Q
    |||||||    
T  43456727 ttcagct 43456733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 15120334 - 15120246
Alignment:
Q  112 tgtttggattggcttatttgaacttatctgctaacataaacacttttga--gtgtttgaaagagtttacggaaacaacttatgccatgt 198  Q
    ||||||||||| ||||||||||||||||| ||| |||||||| || |||   ||||||  |||| ||| |||||||||||||| |||||    
T  15120334 tgtttggattgacttatttgaacttatctactagcataaacagttgtgaatctgtttgggagagcttatggaaacaacttatgacatgt 15120246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 41170761 - 41170712
Alignment:
Q  112 tgtttggattggcttatttgaacttatctgctaacataaacacttttgag 161  Q
    |||||||||||||||||||||  |||||| ||||||||||||||| ||||    
T  41170761 tgtttggattggcttatttgagtttatctactaacataaacacttgtgag 41170712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 43259987 - 43259942
Alignment:
Q  111 ttgtttggattggcttatttgaacttatctgctaacataaacactt 156  Q
    |||||||||||||||||||||||||||||| ||| ||||| |||||    
T  43259987 ttgtttggattggcttatttgaacttatctactagcataagcactt 43259942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 14299602 - 14299657
Alignment:
Q  162 tgtttgaaagagtttacggaaacaacttatgccatgtctataaattgttttcagct 217  Q
    |||||| ||||||||| |||||||||||||| ||| || ||| |||||||||||||    
T  14299602 tgtttggaagagtttatggaaacaacttatgacatatccatacattgttttcagct 14299657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 155
Target Start/End: Original strand, 30990358 - 30990401
Alignment:
Q  112 tgtttggattggcttatttgaacttatctgctaacataaacact 155  Q
    ||||||||||||||||||||| ||||||| ||||||||| ||||    
T  30990358 tgtttggattggcttatttgagcttatctactaacataagcact 30990401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 154
Target Start/End: Original strand, 40837355 - 40837398
Alignment:
Q  111 ttgtttggattggcttatttgaacttatctgctaacataaacac 154  Q
    |||||||||||||||||||||| ||||||| || ||||||||||    
T  40837355 ttgtttggattggcttatttgagcttatctactgacataaacac 40837398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 2790684 - 2790646
Alignment:
Q  112 tgtttggattggcttatttgaacttatctgctaacataa 150  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  2790684 tgtttggattcgcttatttgaacttatctgctagcataa 2790646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 42852617 - 42852670
Alignment:
Q  108 ggtttgtttggattggcttatttgaacttatctgctaacataaacacttttgag 161  Q
    ||||| |||||||| |||||||||||||||||||||  ||||| ||||| ||||    
T  42852617 ggtttatttggatttgcttatttgaacttatctgctggcataagcacttgtgag 42852670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 140
Target Start/End: Complemental strand, 2790389 - 2790361
Alignment:
Q  112 tgtttggattggcttatttgaacttatct 140  Q
    |||||||||||||||||||||||||||||    
T  2790389 tgtttggattggcttatttgaacttatct 2790361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 4350845 - 4350797
Alignment:
Q  108 ggtttgtttggattggcttatttgaacttatctgctaacataaacactt 156  Q
    ||||||||||||||||||||||||| ||| ||| || |||||| |||||    
T  4350845 ggtttgtttggattggcttatttgagcttctctactgacataagcactt 4350797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 33192345 - 33192309
Alignment:
Q  119 attggcttatttgaacttatctgctaacataaacact 155  Q
    |||||||||||||| |||||||||| |||||||||||    
T  33192345 attggcttatttgagcttatctgctgacataaacact 33192309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 43065440 - 43065476
Alignment:
Q  181 aaacaacttatgccatgtctataaattgttttcagct 217  Q
    |||||||||||| |||||| |||||||||||||||||    
T  43065440 aaacaacttatgacatgtccataaattgttttcagct 43065476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 44269046 - 44269010
Alignment:
Q  181 aaacaacttatgccatgtctataaattgttttcagct 217  Q
    |||||||||||| |||||| |||||||||||||||||    
T  44269046 aaacaacttatgacatgtccataaattgttttcagct 44269010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 10488618 - 10488572
Alignment:
Q  108 ggtttgtttggattggcttatttgaacttatctgctaacataaacac 154  Q
    ||||||||||||||||||||||||| ||||||  |||||||||||||    
T  10488618 ggtttgtttggattggcttatttgagcttatcaactaacataaacac 10488572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 40859703 - 40859740
Alignment:
Q  113 gtttggattggcttatttgaacttatctgctaacataa 150  Q
    |||||||||||||||||||| |||||||||||||||||    
T  40859703 gtttggattggcttatttgagcttatctgctaacataa 40859740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 10062060 - 10062104
Alignment:
Q  112 tgtttggattggcttatttgaacttatctgctaacataaacactt 156  Q
    ||||||||||||||||||||| ||||||| ||||||| |||||||    
T  10062060 tgtttggattggcttatttgagcttatctactaacatcaacactt 10062104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 18331866 - 18331811
Alignment:
Q  111 ttgtttggattggcttatttgaacttatctgctaacataaacacttttgagtgttt 166  Q
    |||||||||||| ||||||||| ||||||| ||||||||| ||||| |||| ||||    
T  18331866 ttgtttggattgacttatttgatcttatctactaacataagcacttgtgagagttt 18331811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 10758176 - 10758214
Alignment:
Q  112 tgtttggattggcttatttgaacttatctgctaacataa 150  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  10758176 tgtttgaattgacttatttgaacttatctgctaacataa 10758214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 16162911 - 16162862
Alignment:
Q  112 tgtttggattggcttatttgaacttatctgctaacataaacacttttgag 161  Q
    |||||||||||||||||||||  |||||| ||| ||||||||||| ||||    
T  16162911 tgtttggattggcttatttgagtttatctactagcataaacacttgtgag 16162862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 217
Target Start/End: Original strand, 11569376 - 11569483
Alignment:
Q  112 tgtttggattggcttatttgaacttatctgctaacataaacacttttgag--tgtttgaaagagtttacggaaacaacttatgccatgtctataaattgt 209  Q
    ||||| |||||||||||  || ||||||||||  ||||| ||||| ||||  ||||| | |||| ||| ||||||| |||||| |||||  |||| ||||    
T  11569376 tgttttgattggcttatcagagcttatctgctggcataaccacttgtgagactgtttaagagagcttatggaaacagcttatgacatgtacataagttgt 11569475  T
Q  210 tttcagct 217  Q
    ||||||||    
T  11569476 tttcagct 11569483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 45071529 - 45071497
Alignment:
Q  108 ggtttgtttggattggcttatttgaacttatct 140  Q
    ||||||||||||||||||||| |||||||||||    
T  45071529 ggtttgtttggattggcttatctgaacttatct 45071497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 159892 - 159936
Alignment:
Q  112 tgtttggattggcttatttgaacttatctgctaacataaacactt 156  Q
    ||||||||||||||||||||| ||||||| |||| ||||||||||    
T  159892 tgtttggattggcttatttgagcttatctactaatataaacactt 159936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 2996718 - 2996630
Alignment:
Q  118 gattggcttatttgaacttatctgctaacataaacacttttgag--tgtttgaaagagtttacggaaacaacttatgccatgtctataa 204  Q
    |||| |||||||||||||||| |  | |||||| ||||||||||  ||||||| |||| ||| | |||||||||||| |||||| ||||    
T  2996718 gattagcttatttgaacttatttattgacataagcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgtccataa 2996630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 214
Target Start/End: Original strand, 27123271 - 27123375
Alignment:
Q  112 tgtttggattggcttatttgaacttatctgctaacataaacacttttgag--tgtttgaaagagtttacggaaacaacttatgccatgtctataaattgt 209  Q
    ||||||||||  ||||||||| |||||   ||| |||||  |||| ||||  ||||||| |||| ||| |||||||||||||| ||||||| ||| ||||    
T  27123271 tgtttggattaacttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgt 27123370  T
Q  210 tttca 214  Q
    |||||    
T  27123371 tttca 27123375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 53155340 - 53155304
Alignment:
Q  181 aaacaacttatgccatgtctataaattgttttcagct 217  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  53155340 aaacaacttatgacatgtctataaattgctttcagct 53155304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 212
Target Start/End: Original strand, 4153 - 4244
Alignment:
Q  123 gcttatttgaacttatctgctaacataaacacttttgag--tgtttgaaagagtttacggaaacaacttatgccatgtctataaattgtttt 212  Q
    |||||||||| ||| ||| || |||||| ||||| ||||  ||||||  |||||||| |||||||||||||||  |||| |||| |||||||    
T  4153 gcttatttgagcttgtctactgacataagcacttgtgagcttgtttgtgagagtttatggaaacaacttatgcattgtcaataagttgtttt 4244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University