View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1929_low_12 (Length: 383)
Name: NF1929_low_12
Description: NF1929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1929_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 106 - 367
Target Start/End: Original strand, 48041880 - 48042136
Alignment:
| Q |
106 |
cattgacaatcatctttataaaacaaaatggtttacaatcatcaaattcttgtggtaaagtcgcaataaaaatacgtgtcctttgctagtccaacaagta |
205 |
Q |
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| T |
48041880 |
cattgacaatcatctttataaaacaaaatggtttacaatcatcaaattcttgtggtaaagtcgcaataaaaatacgtgtcctttgctagtccaacaagta |
48041979 |
T |
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| Q |
206 |
ttgtttacatat----nnnnnnngaagaagacaagtatgatttacggcatttacgtttgccaagtttgcaaatttgctcaatcacggattaataatcatt |
301 |
Q |
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| T |
48041980 |
ttgtttacatataaaaaaaaaaagaagaagacaagtatgatttacggcatttac---------gtttgcaaatttgctcaatcacggattaataatcatt |
48042070 |
T |
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| Q |
302 |
ctttacaataaaataaaagagttttcattggctatgtgttcaagcataatggcgtttggccgtatg |
367 |
Q |
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| T |
48042071 |
ctttacaataaaataaaagagttttcattggctatgtgttcaagcataatggcgtttggccgtatg |
48042136 |
T |
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